miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10865 3' -56.5 NC_002794.1 + 104765 0.66 0.936152
Target:  5'- cGGUcGGCCcGCCGGCGCuccGAcacGC-CGACAg -3'
miRNA:   3'- -CCA-CUGGuCGGCCGUG---CU---CGaGUUGU- -5'
10865 3' -56.5 NC_002794.1 + 96739 0.66 0.936152
Target:  5'- --cGACC-GCCGGCGCGucucgcaagcGGC-CGGCGg -3'
miRNA:   3'- ccaCUGGuCGGCCGUGC----------UCGaGUUGU- -5'
10865 3' -56.5 NC_002794.1 + 32862 0.66 0.936152
Target:  5'- --cGGCCgAGCCGGCGgGcGGCggCGGCGg -3'
miRNA:   3'- ccaCUGG-UCGGCCGUgC-UCGa-GUUGU- -5'
10865 3' -56.5 NC_002794.1 + 178267 0.66 0.936152
Target:  5'- gGGcUGACCggagacggGGUCGGUcgaGCGAcgGCUCGACGc -3'
miRNA:   3'- -CC-ACUGG--------UCGGCCG---UGCU--CGAGUUGU- -5'
10865 3' -56.5 NC_002794.1 + 101902 0.66 0.936152
Target:  5'- aGGUGACCuGCaacgccuucuaCGGguuCACGGGCUuCAGCc -3'
miRNA:   3'- -CCACUGGuCG-----------GCC---GUGCUCGA-GUUGu -5'
10865 3' -56.5 NC_002794.1 + 187438 0.66 0.931243
Target:  5'- --aGGCCAGCCGcGC-CGucugccgccGCUCGGCGu -3'
miRNA:   3'- ccaCUGGUCGGC-CGuGCu--------CGAGUUGU- -5'
10865 3' -56.5 NC_002794.1 + 111036 0.66 0.931243
Target:  5'- cGUGAuCCGGCUGGCgguGC-AGCUCGGuCAc -3'
miRNA:   3'- cCACU-GGUCGGCCG---UGcUCGAGUU-GU- -5'
10865 3' -56.5 NC_002794.1 + 18821 0.66 0.931243
Target:  5'- cGGcGACCucGGCCGGCGCgGAGgagacCUCGAg- -3'
miRNA:   3'- -CCaCUGG--UCGGCCGUG-CUC-----GAGUUgu -5'
10865 3' -56.5 NC_002794.1 + 55979 0.66 0.931243
Target:  5'- uGGaUGGCgUAGCCGcGgGCGAGCacCAGCAu -3'
miRNA:   3'- -CC-ACUG-GUCGGC-CgUGCUCGa-GUUGU- -5'
10865 3' -56.5 NC_002794.1 + 86927 0.66 0.930739
Target:  5'- cGUGGCgGGCaGGCggggcgggauccgGCGAGCgUCGACGu -3'
miRNA:   3'- cCACUGgUCGgCCG-------------UGCUCG-AGUUGU- -5'
10865 3' -56.5 NC_002794.1 + 44358 0.66 0.926103
Target:  5'- --aGACCgagagcgcGGCgGGCGCGAcguccgcgacGCUCGACGc -3'
miRNA:   3'- ccaCUGG--------UCGgCCGUGCU----------CGAGUUGU- -5'
10865 3' -56.5 NC_002794.1 + 53638 0.66 0.926103
Target:  5'- aGGUcGGCCgAGCCGGCguuccgcaaACGGuGCUCcagGACGg -3'
miRNA:   3'- -CCA-CUGG-UCGGCCG---------UGCU-CGAG---UUGU- -5'
10865 3' -56.5 NC_002794.1 + 122172 0.66 0.926103
Target:  5'- -cUGGCCgAGCaCGGCGCGcGCgugugCGACGc -3'
miRNA:   3'- ccACUGG-UCG-GCCGUGCuCGa----GUUGU- -5'
10865 3' -56.5 NC_002794.1 + 55213 0.66 0.926103
Target:  5'- --cGGCggaGGCCGGCGguCGAGC-CGACGa -3'
miRNA:   3'- ccaCUGg--UCGGCCGU--GCUCGaGUUGU- -5'
10865 3' -56.5 NC_002794.1 + 121392 0.66 0.926103
Target:  5'- cGG-GACCgcGGCCGGCGcCGGGaccgCGACc -3'
miRNA:   3'- -CCaCUGG--UCGGCCGU-GCUCga--GUUGu -5'
10865 3' -56.5 NC_002794.1 + 136339 0.66 0.926103
Target:  5'- cGGUGGCgGGCCaGCgugGCGuugaGGCUCAGgAg -3'
miRNA:   3'- -CCACUGgUCGGcCG---UGC----UCGAGUUgU- -5'
10865 3' -56.5 NC_002794.1 + 184587 0.66 0.920734
Target:  5'- cGGcGGCCAcGCgCGGcCGCGGGaUCGGCAa -3'
miRNA:   3'- -CCaCUGGU-CG-GCC-GUGCUCgAGUUGU- -5'
10865 3' -56.5 NC_002794.1 + 56329 0.66 0.920734
Target:  5'- cGUGGCCGGCgacgCGGCGaagaGcAGCUCGAa- -3'
miRNA:   3'- cCACUGGUCG----GCCGUg---C-UCGAGUUgu -5'
10865 3' -56.5 NC_002794.1 + 151621 0.66 0.920734
Target:  5'- cGGcUGA-CGGCCGGCACuuGGCUCGc-- -3'
miRNA:   3'- -CC-ACUgGUCGGCCGUGc-UCGAGUugu -5'
10865 3' -56.5 NC_002794.1 + 44238 0.66 0.915135
Target:  5'- cGGUG-CCGGgCGGCucggugccggGCG-GCUCGGCc -3'
miRNA:   3'- -CCACuGGUCgGCCG----------UGCuCGAGUUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.