miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10865 3' -56.5 NC_002794.1 + 33848 1.1 0.00268
Target:  5'- uGGUGACCAGCCGGCACGAGCUCAACAg -3'
miRNA:   3'- -CCACUGGUCGGCCGUGCUCGAGUUGU- -5'
10865 3' -56.5 NC_002794.1 + 44409 0.83 0.164346
Target:  5'- cGGUcuGACCGGCCGGCGCcgagcGGCUCGACGa -3'
miRNA:   3'- -CCA--CUGGUCGGCCGUGc----UCGAGUUGU- -5'
10865 3' -56.5 NC_002794.1 + 154274 0.8 0.260341
Target:  5'- uGGUcccGACC-GCCGGCGCG-GCUCGACGg -3'
miRNA:   3'- -CCA---CUGGuCGGCCGUGCuCGAGUUGU- -5'
10865 3' -56.5 NC_002794.1 + 108457 0.75 0.44935
Target:  5'- cGGcGGCCcGCCGGCACGGGC-CGAgGg -3'
miRNA:   3'- -CCaCUGGuCGGCCGUGCUCGaGUUgU- -5'
10865 3' -56.5 NC_002794.1 + 49471 0.75 0.467478
Target:  5'- cGUGACCGGCCGcCGCGGGUcugUCGACc -3'
miRNA:   3'- cCACUGGUCGGCcGUGCUCG---AGUUGu -5'
10865 3' -56.5 NC_002794.1 + 76963 0.75 0.467478
Target:  5'- --cGuCCGGCCGGCccgcCGAGCUCGACc -3'
miRNA:   3'- ccaCuGGUCGGCCGu---GCUCGAGUUGu -5'
10865 3' -56.5 NC_002794.1 + 62055 0.74 0.504815
Target:  5'- cGGUGGCCGacGCCGGCGgCGAcGC-CGGCGg -3'
miRNA:   3'- -CCACUGGU--CGGCCGU-GCU-CGaGUUGU- -5'
10865 3' -56.5 NC_002794.1 + 114617 0.74 0.532668
Target:  5'- aGGUGGCgCAGCagguccuCGGCGCGgAGCUCGAg- -3'
miRNA:   3'- -CCACUG-GUCG-------GCCGUGC-UCGAGUUgu -5'
10865 3' -56.5 NC_002794.1 + 143560 0.74 0.543379
Target:  5'- cGGUGGcCCAGCCGuGCGCGccgucCUCGGCGg -3'
miRNA:   3'- -CCACU-GGUCGGC-CGUGCuc---GAGUUGU- -5'
10865 3' -56.5 NC_002794.1 + 3114 0.73 0.582859
Target:  5'- cGUGACCu--UGGCGCGAGCUCGAa- -3'
miRNA:   3'- cCACUGGucgGCCGUGCUCGAGUUgu -5'
10865 3' -56.5 NC_002794.1 + 182360 0.72 0.639948
Target:  5'- gGGUGACCGGgC-GCACGGccccccggucccccGCUCAGCGg -3'
miRNA:   3'- -CCACUGGUCgGcCGUGCU--------------CGAGUUGU- -5'
10865 3' -56.5 NC_002794.1 + 19444 0.72 0.663006
Target:  5'- --aGGCCccgAGCgGGCACGAGCggCGGCGg -3'
miRNA:   3'- ccaCUGG---UCGgCCGUGCUCGa-GUUGU- -5'
10865 3' -56.5 NC_002794.1 + 128084 0.72 0.663006
Target:  5'- -aUGGCCcgAGUCGGCGacgggGAGCUCGACGg -3'
miRNA:   3'- ccACUGG--UCGGCCGUg----CUCGAGUUGU- -5'
10865 3' -56.5 NC_002794.1 + 75288 0.72 0.663006
Target:  5'- --cGGCCGGCCGGCGCcucgccAGC-CGACAu -3'
miRNA:   3'- ccaCUGGUCGGCCGUGc-----UCGaGUUGU- -5'
10865 3' -56.5 NC_002794.1 + 185387 0.71 0.682956
Target:  5'- --aGGCCAGCCagaagacgagGGCGCGGGCcCGACc -3'
miRNA:   3'- ccaCUGGUCGG----------CCGUGCUCGaGUUGu -5'
10865 3' -56.5 NC_002794.1 + 34498 0.71 0.682956
Target:  5'- aGGUGACCAaCCagGGCGCGgAGgaCAACAu -3'
miRNA:   3'- -CCACUGGUcGG--CCGUGC-UCgaGUUGU- -5'
10865 3' -56.5 NC_002794.1 + 90813 0.71 0.69979
Target:  5'- aGGUGGCgugcggacgcccauCAGUCGGUACGAGggCGGCGu -3'
miRNA:   3'- -CCACUG--------------GUCGGCCGUGCUCgaGUUGU- -5'
10865 3' -56.5 NC_002794.1 + 80031 0.71 0.702745
Target:  5'- gGGaGACCAcucgccgacaguGCCGGCGCGAGCcgCggUAc -3'
miRNA:   3'- -CCaCUGGU------------CGGCCGUGCUCGa-GuuGU- -5'
10865 3' -56.5 NC_002794.1 + 185027 0.71 0.712558
Target:  5'- cGGUGACCAGCUccaaGUACG-GCagCAACAg -3'
miRNA:   3'- -CCACUGGUCGGc---CGUGCuCGa-GUUGU- -5'
10865 3' -56.5 NC_002794.1 + 44158 0.7 0.741566
Target:  5'- aGUGcACguGCaCGGCGCGAGCggCGGCu -3'
miRNA:   3'- cCAC-UGguCG-GCCGUGCUCGa-GUUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.