miRNA display CGI


Results 21 - 40 of 93 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10865 3' -56.5 NC_002794.1 + 44238 0.66 0.915135
Target:  5'- cGGUG-CCGGgCGGCucggugccggGCG-GCUCGGCc -3'
miRNA:   3'- -CCACuGGUCgGCCG----------UGCuCGAGUUGu -5'
10865 3' -56.5 NC_002794.1 + 93998 0.66 0.915135
Target:  5'- cGGacGCCGgcGCCGGCGgCGGGC-CGGCGg -3'
miRNA:   3'- -CCacUGGU--CGGCCGU-GCUCGaGUUGU- -5'
10865 3' -56.5 NC_002794.1 + 15630 0.66 0.909307
Target:  5'- cGUGACUuacgacggAGuCCGGCACcAGCUgAACGu -3'
miRNA:   3'- cCACUGG--------UC-GGCCGUGcUCGAgUUGU- -5'
10865 3' -56.5 NC_002794.1 + 14270 0.66 0.909307
Target:  5'- --cGACCgaGGUguuCGGCugGAGCgUCAGCGu -3'
miRNA:   3'- ccaCUGG--UCG---GCCGugCUCG-AGUUGU- -5'
10865 3' -56.5 NC_002794.1 + 189573 0.66 0.909307
Target:  5'- --cGGUCGGCCGGCcCGGGC-CGGCGc -3'
miRNA:   3'- ccaCUGGUCGGCCGuGCUCGaGUUGU- -5'
10865 3' -56.5 NC_002794.1 + 123356 0.66 0.909307
Target:  5'- cGGU-ACCGGCCGcucuGCGUGGGCUaCAGCGg -3'
miRNA:   3'- -CCAcUGGUCGGC----CGUGCUCGA-GUUGU- -5'
10865 3' -56.5 NC_002794.1 + 103662 0.66 0.906913
Target:  5'- --aGGCguGCCGGUGCGAGUggaaguggaagggCAGCGa -3'
miRNA:   3'- ccaCUGguCGGCCGUGCUCGa------------GUUGU- -5'
10865 3' -56.5 NC_002794.1 + 115184 0.67 0.903252
Target:  5'- --cGGCCcgguGCCGGCGguCGAGC-CGGCGu -3'
miRNA:   3'- ccaCUGGu---CGGCCGU--GCUCGaGUUGU- -5'
10865 3' -56.5 NC_002794.1 + 128876 0.67 0.896973
Target:  5'- cGUGACCcuuuGCCGcuGUACGgAGCUCGAg- -3'
miRNA:   3'- cCACUGGu---CGGC--CGUGC-UCGAGUUgu -5'
10865 3' -56.5 NC_002794.1 + 118289 0.67 0.896973
Target:  5'- cGGgGACCGcGCCgGGCGCGucGCUCGuCGu -3'
miRNA:   3'- -CCaCUGGU-CGG-CCGUGCu-CGAGUuGU- -5'
10865 3' -56.5 NC_002794.1 + 137427 0.67 0.896973
Target:  5'- cGGaGACCGcGCCGGCgcucuggaACGA-CUCGGCGg -3'
miRNA:   3'- -CCaCUGGU-CGGCCG--------UGCUcGAGUUGU- -5'
10865 3' -56.5 NC_002794.1 + 93154 0.67 0.890471
Target:  5'- cGUGGCCA-UCGGCAagauggagGAGUUCAACGc -3'
miRNA:   3'- cCACUGGUcGGCCGUg-------CUCGAGUUGU- -5'
10865 3' -56.5 NC_002794.1 + 37495 0.67 0.890471
Target:  5'- --cGACCAGCCGcacGCGCGuGUggucgcgCAGCAc -3'
miRNA:   3'- ccaCUGGUCGGC---CGUGCuCGa------GUUGU- -5'
10865 3' -56.5 NC_002794.1 + 68490 0.67 0.890471
Target:  5'- aGGcGGCCgAGCCGGCcguGCGGGUgaucugcCAGCGa -3'
miRNA:   3'- -CCaCUGG-UCGGCCG---UGCUCGa------GUUGU- -5'
10865 3' -56.5 NC_002794.1 + 128185 0.67 0.889809
Target:  5'- cGGUGACCucGUCGGUcgcgacgAUGGGaCUCGACc -3'
miRNA:   3'- -CCACUGGu-CGGCCG-------UGCUC-GAGUUGu -5'
10865 3' -56.5 NC_002794.1 + 187858 0.67 0.883751
Target:  5'- -cUGcCCAGCCGcGCGCG-GCUCGccGCu -3'
miRNA:   3'- ccACuGGUCGGC-CGUGCuCGAGU--UGu -5'
10865 3' -56.5 NC_002794.1 + 8137 0.67 0.883751
Target:  5'- cGGUGACCGGCgaCGGCACc-GCUUc--- -3'
miRNA:   3'- -CCACUGGUCG--GCCGUGcuCGAGuugu -5'
10865 3' -56.5 NC_002794.1 + 123438 0.67 0.876817
Target:  5'- cGGUGACCgucgccgagcGGCUGGC-CGAGCa----- -3'
miRNA:   3'- -CCACUGG----------UCGGCCGuGCUCGaguugu -5'
10865 3' -56.5 NC_002794.1 + 111325 0.67 0.876817
Target:  5'- --gGGCCAG-CGGCGCGGGCcgCAGa- -3'
miRNA:   3'- ccaCUGGUCgGCCGUGCUCGa-GUUgu -5'
10865 3' -56.5 NC_002794.1 + 185185 0.67 0.876817
Target:  5'- cGGUcGGCgCGGUCGGCGCGgucaucgcGGCUCGcgccGCGg -3'
miRNA:   3'- -CCA-CUG-GUCGGCCGUGC--------UCGAGU----UGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.