miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10865 3' -56.5 NC_002794.1 + 3114 0.73 0.582859
Target:  5'- cGUGACCu--UGGCGCGAGCUCGAa- -3'
miRNA:   3'- cCACUGGucgGCCGUGCUCGAGUUgu -5'
10865 3' -56.5 NC_002794.1 + 8137 0.67 0.883751
Target:  5'- cGGUGACCGGCgaCGGCACc-GCUUc--- -3'
miRNA:   3'- -CCACUGGUCG--GCCGUGcuCGAGuugu -5'
10865 3' -56.5 NC_002794.1 + 12975 0.67 0.869671
Target:  5'- cGUGGCCuucuuccuccuGGCCGuGCuCGuGCUCAGCc -3'
miRNA:   3'- cCACUGG-----------UCGGC-CGuGCuCGAGUUGu -5'
10865 3' -56.5 NC_002794.1 + 14270 0.66 0.909307
Target:  5'- --cGACCgaGGUguuCGGCugGAGCgUCAGCGu -3'
miRNA:   3'- ccaCUGG--UCG---GCCGugCUCG-AGUUGU- -5'
10865 3' -56.5 NC_002794.1 + 15630 0.66 0.909307
Target:  5'- cGUGACUuacgacggAGuCCGGCACcAGCUgAACGu -3'
miRNA:   3'- cCACUGG--------UC-GGCCGUGcUCGAgUUGU- -5'
10865 3' -56.5 NC_002794.1 + 18821 0.66 0.931243
Target:  5'- cGGcGACCucGGCCGGCGCgGAGgagacCUCGAg- -3'
miRNA:   3'- -CCaCUGG--UCGGCCGUG-CUC-----GAGUUgu -5'
10865 3' -56.5 NC_002794.1 + 19444 0.72 0.663006
Target:  5'- --aGGCCccgAGCgGGCACGAGCggCGGCGg -3'
miRNA:   3'- ccaCUGG---UCGgCCGUGCUCGa-GUUGU- -5'
10865 3' -56.5 NC_002794.1 + 32862 0.66 0.936152
Target:  5'- --cGGCCgAGCCGGCGgGcGGCggCGGCGg -3'
miRNA:   3'- ccaCUGG-UCGGCCGUgC-UCGa-GUUGU- -5'
10865 3' -56.5 NC_002794.1 + 33848 1.1 0.00268
Target:  5'- uGGUGACCAGCCGGCACGAGCUCAACAg -3'
miRNA:   3'- -CCACUGGUCGGCCGUGCUCGAGUUGU- -5'
10865 3' -56.5 NC_002794.1 + 34498 0.71 0.682956
Target:  5'- aGGUGACCAaCCagGGCGCGgAGgaCAACAu -3'
miRNA:   3'- -CCACUGGUcGG--CCGUGC-UCgaGUUGU- -5'
10865 3' -56.5 NC_002794.1 + 34979 0.69 0.805629
Target:  5'- -cUGGCCAcgaaacugcGCCGGCuGCGGGCcCGGCAc -3'
miRNA:   3'- ccACUGGU---------CGGCCG-UGCUCGaGUUGU- -5'
10865 3' -56.5 NC_002794.1 + 37495 0.67 0.890471
Target:  5'- --cGACCAGCCGcacGCGCGuGUggucgcgCAGCAc -3'
miRNA:   3'- ccaCUGGUCGGC---CGUGCuCGa------GUUGU- -5'
10865 3' -56.5 NC_002794.1 + 38442 0.69 0.822695
Target:  5'- cGGgccgGACUgaggAGCCGGCGCG-GCcgCGGCGc -3'
miRNA:   3'- -CCa---CUGG----UCGGCCGUGCuCGa-GUUGU- -5'
10865 3' -56.5 NC_002794.1 + 38630 0.67 0.876817
Target:  5'- --cGACUcGCCGGUGCGgcgcgacggaGGCUCGACu -3'
miRNA:   3'- ccaCUGGuCGGCCGUGC----------UCGAGUUGu -5'
10865 3' -56.5 NC_002794.1 + 40545 0.7 0.741566
Target:  5'- aGGgGGCCGG-CGGCAUGAGCUUcuCGu -3'
miRNA:   3'- -CCaCUGGUCgGCCGUGCUCGAGuuGU- -5'
10865 3' -56.5 NC_002794.1 + 44158 0.7 0.741566
Target:  5'- aGUGcACguGCaCGGCGCGAGCggCGGCu -3'
miRNA:   3'- cCAC-UGguCG-GCCGUGCUCGa-GUUGu -5'
10865 3' -56.5 NC_002794.1 + 44238 0.66 0.915135
Target:  5'- cGGUG-CCGGgCGGCucggugccggGCG-GCUCGGCc -3'
miRNA:   3'- -CCACuGGUCgGCCG----------UGCuCGAGUUGu -5'
10865 3' -56.5 NC_002794.1 + 44358 0.66 0.926103
Target:  5'- --aGACCgagagcgcGGCgGGCGCGAcguccgcgacGCUCGACGc -3'
miRNA:   3'- ccaCUGG--------UCGgCCGUGCU----------CGAGUUGU- -5'
10865 3' -56.5 NC_002794.1 + 44409 0.83 0.164346
Target:  5'- cGGUcuGACCGGCCGGCGCcgagcGGCUCGACGa -3'
miRNA:   3'- -CCA--CUGGUCGGCCGUGc----UCGAGUUGU- -5'
10865 3' -56.5 NC_002794.1 + 49471 0.75 0.467478
Target:  5'- cGUGACCGGCCGcCGCGGGUcugUCGACc -3'
miRNA:   3'- cCACUGGUCGGCcGUGCUCG---AGUUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.