miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10865 5' -57.5 NC_002794.1 + 176626 0.66 0.89257
Target:  5'- cUCGUGGcGUUCGgcccggaacguUGGAuuGCGGaCACGAu -3'
miRNA:   3'- uAGCACCuCGAGU-----------ACCU--CGCC-GUGCU- -5'
10865 5' -57.5 NC_002794.1 + 106419 0.66 0.885221
Target:  5'- -gCGccGGGGCUCAUGGcgcuguuggagaaGGCGGUGCa- -3'
miRNA:   3'- uaGCa-CCUCGAGUACC-------------UCGCCGUGcu -5'
10865 5' -57.5 NC_002794.1 + 53806 0.66 0.879013
Target:  5'- cUCGgcgGGAGcCUCGgcgGGAGCcucGGCGgGAg -3'
miRNA:   3'- uAGCa--CCUC-GAGUa--CCUCG---CCGUgCU- -5'
10865 5' -57.5 NC_002794.1 + 123808 0.66 0.864605
Target:  5'- uUCG-GGGGCgcggacgagCA-GGAGCGGCGCc- -3'
miRNA:   3'- uAGCaCCUCGa--------GUaCCUCGCCGUGcu -5'
10865 5' -57.5 NC_002794.1 + 115968 0.66 0.864605
Target:  5'- cGUgGgggGGAGCgggaCggGGAGCGGCGCc- -3'
miRNA:   3'- -UAgCa--CCUCGa---GuaCCUCGCCGUGcu -5'
10865 5' -57.5 NC_002794.1 + 153529 0.66 0.864605
Target:  5'- gGUCG-GGAGag-GUGG-GCGGCugGAu -3'
miRNA:   3'- -UAGCaCCUCgagUACCuCGCCGugCU- -5'
10865 5' -57.5 NC_002794.1 + 32834 0.66 0.857094
Target:  5'- cUCGcGGccGGCUCAUcGGuAGCGGCAgCGGc -3'
miRNA:   3'- uAGCaCC--UCGAGUA-CC-UCGCCGU-GCU- -5'
10865 5' -57.5 NC_002794.1 + 127719 0.67 0.825145
Target:  5'- -aCGaUGGGGCUCGcGGA-CGGCAcCGAa -3'
miRNA:   3'- uaGC-ACCUCGAGUaCCUcGCCGU-GCU- -5'
10865 5' -57.5 NC_002794.1 + 179953 0.67 0.825145
Target:  5'- -cCGgGGAGCgagcgacagCA-GGAGCGGCAgGAg -3'
miRNA:   3'- uaGCaCCUCGa--------GUaCCUCGCCGUgCU- -5'
10865 5' -57.5 NC_002794.1 + 10623 0.68 0.790485
Target:  5'- cGUCGUcaacaugccacGG-GCgg--GGAGCGGCGCGAg -3'
miRNA:   3'- -UAGCA-----------CCuCGaguaCCUCGCCGUGCU- -5'
10865 5' -57.5 NC_002794.1 + 91257 0.68 0.763012
Target:  5'- cUCGcGGAcgccGUUCGUGGAcCGGCGCGGc -3'
miRNA:   3'- uAGCaCCU----CGAGUACCUcGCCGUGCU- -5'
10865 5' -57.5 NC_002794.1 + 43983 0.68 0.763012
Target:  5'- gGUCGuUGGAGC-CGgacgugugGGAGCacGGCGCGGc -3'
miRNA:   3'- -UAGC-ACCUCGaGUa-------CCUCG--CCGUGCU- -5'
10865 5' -57.5 NC_002794.1 + 47752 0.69 0.72485
Target:  5'- -aCGUGGcGGC-CGUGGucGCGGCACa- -3'
miRNA:   3'- uaGCACC-UCGaGUACCu-CGCCGUGcu -5'
10865 5' -57.5 NC_002794.1 + 96557 0.69 0.72485
Target:  5'- gGUCGacgaGGAGCg---GGAGCGGCugGu -3'
miRNA:   3'- -UAGCa---CCUCGaguaCCUCGCCGugCu -5'
10865 5' -57.5 NC_002794.1 + 43895 0.7 0.675472
Target:  5'- cGUCGccGGcGuCUCGUgaGGAGCGGCGCGGu -3'
miRNA:   3'- -UAGCa-CCuC-GAGUA--CCUCGCCGUGCU- -5'
10865 5' -57.5 NC_002794.1 + 115904 0.7 0.665459
Target:  5'- -gCGgGGGGUUCGUGGGGUggacuuGGCGCGGc -3'
miRNA:   3'- uaGCaCCUCGAGUACCUCG------CCGUGCU- -5'
10865 5' -57.5 NC_002794.1 + 149469 0.71 0.595082
Target:  5'- gGUCGaGGAGCgagggGGGGCGGCAUGc -3'
miRNA:   3'- -UAGCaCCUCGagua-CCUCGCCGUGCu -5'
10865 5' -57.5 NC_002794.1 + 141443 0.76 0.374192
Target:  5'- -cCG-GGGGCgCcgGGAGCGGCGCGGc -3'
miRNA:   3'- uaGCaCCUCGaGuaCCUCGCCGUGCU- -5'
10865 5' -57.5 NC_002794.1 + 33882 1.06 0.003583
Target:  5'- gAUCGUGGAGCUCAUGGAGCGGCACGAc -3'
miRNA:   3'- -UAGCACCUCGAGUACCUCGCCGUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.