Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10865 | 5' | -57.5 | NC_002794.1 | + | 10623 | 0.68 | 0.790485 |
Target: 5'- cGUCGUcaacaugccacGG-GCgg--GGAGCGGCGCGAg -3' miRNA: 3'- -UAGCA-----------CCuCGaguaCCUCGCCGUGCU- -5' |
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10865 | 5' | -57.5 | NC_002794.1 | + | 32834 | 0.66 | 0.857094 |
Target: 5'- cUCGcGGccGGCUCAUcGGuAGCGGCAgCGGc -3' miRNA: 3'- uAGCaCC--UCGAGUA-CC-UCGCCGU-GCU- -5' |
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10865 | 5' | -57.5 | NC_002794.1 | + | 33882 | 1.06 | 0.003583 |
Target: 5'- gAUCGUGGAGCUCAUGGAGCGGCACGAc -3' miRNA: 3'- -UAGCACCUCGAGUACCUCGCCGUGCU- -5' |
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10865 | 5' | -57.5 | NC_002794.1 | + | 43895 | 0.7 | 0.675472 |
Target: 5'- cGUCGccGGcGuCUCGUgaGGAGCGGCGCGGu -3' miRNA: 3'- -UAGCa-CCuC-GAGUA--CCUCGCCGUGCU- -5' |
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10865 | 5' | -57.5 | NC_002794.1 | + | 43983 | 0.68 | 0.763012 |
Target: 5'- gGUCGuUGGAGC-CGgacgugugGGAGCacGGCGCGGc -3' miRNA: 3'- -UAGC-ACCUCGaGUa-------CCUCG--CCGUGCU- -5' |
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10865 | 5' | -57.5 | NC_002794.1 | + | 47752 | 0.69 | 0.72485 |
Target: 5'- -aCGUGGcGGC-CGUGGucGCGGCACa- -3' miRNA: 3'- uaGCACC-UCGaGUACCu-CGCCGUGcu -5' |
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10865 | 5' | -57.5 | NC_002794.1 | + | 53806 | 0.66 | 0.879013 |
Target: 5'- cUCGgcgGGAGcCUCGgcgGGAGCcucGGCGgGAg -3' miRNA: 3'- uAGCa--CCUC-GAGUa--CCUCG---CCGUgCU- -5' |
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10865 | 5' | -57.5 | NC_002794.1 | + | 91257 | 0.68 | 0.763012 |
Target: 5'- cUCGcGGAcgccGUUCGUGGAcCGGCGCGGc -3' miRNA: 3'- uAGCaCCU----CGAGUACCUcGCCGUGCU- -5' |
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10865 | 5' | -57.5 | NC_002794.1 | + | 96557 | 0.69 | 0.72485 |
Target: 5'- gGUCGacgaGGAGCg---GGAGCGGCugGu -3' miRNA: 3'- -UAGCa---CCUCGaguaCCUCGCCGugCu -5' |
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10865 | 5' | -57.5 | NC_002794.1 | + | 106419 | 0.66 | 0.885221 |
Target: 5'- -gCGccGGGGCUCAUGGcgcuguuggagaaGGCGGUGCa- -3' miRNA: 3'- uaGCa-CCUCGAGUACC-------------UCGCCGUGcu -5' |
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10865 | 5' | -57.5 | NC_002794.1 | + | 115904 | 0.7 | 0.665459 |
Target: 5'- -gCGgGGGGUUCGUGGGGUggacuuGGCGCGGc -3' miRNA: 3'- uaGCaCCUCGAGUACCUCG------CCGUGCU- -5' |
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10865 | 5' | -57.5 | NC_002794.1 | + | 115968 | 0.66 | 0.864605 |
Target: 5'- cGUgGgggGGAGCgggaCggGGAGCGGCGCc- -3' miRNA: 3'- -UAgCa--CCUCGa---GuaCCUCGCCGUGcu -5' |
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10865 | 5' | -57.5 | NC_002794.1 | + | 123808 | 0.66 | 0.864605 |
Target: 5'- uUCG-GGGGCgcggacgagCA-GGAGCGGCGCc- -3' miRNA: 3'- uAGCaCCUCGa--------GUaCCUCGCCGUGcu -5' |
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10865 | 5' | -57.5 | NC_002794.1 | + | 127719 | 0.67 | 0.825145 |
Target: 5'- -aCGaUGGGGCUCGcGGA-CGGCAcCGAa -3' miRNA: 3'- uaGC-ACCUCGAGUaCCUcGCCGU-GCU- -5' |
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10865 | 5' | -57.5 | NC_002794.1 | + | 141443 | 0.76 | 0.374192 |
Target: 5'- -cCG-GGGGCgCcgGGAGCGGCGCGGc -3' miRNA: 3'- uaGCaCCUCGaGuaCCUCGCCGUGCU- -5' |
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10865 | 5' | -57.5 | NC_002794.1 | + | 149469 | 0.71 | 0.595082 |
Target: 5'- gGUCGaGGAGCgagggGGGGCGGCAUGc -3' miRNA: 3'- -UAGCaCCUCGagua-CCUCGCCGUGCu -5' |
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10865 | 5' | -57.5 | NC_002794.1 | + | 153529 | 0.66 | 0.864605 |
Target: 5'- gGUCG-GGAGag-GUGG-GCGGCugGAu -3' miRNA: 3'- -UAGCaCCUCgagUACCuCGCCGugCU- -5' |
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10865 | 5' | -57.5 | NC_002794.1 | + | 176626 | 0.66 | 0.89257 |
Target: 5'- cUCGUGGcGUUCGgcccggaacguUGGAuuGCGGaCACGAu -3' miRNA: 3'- uAGCACCuCGAGU-----------ACCU--CGCC-GUGCU- -5' |
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10865 | 5' | -57.5 | NC_002794.1 | + | 179953 | 0.67 | 0.825145 |
Target: 5'- -cCGgGGAGCgagcgacagCA-GGAGCGGCAgGAg -3' miRNA: 3'- uaGCaCCUCGa--------GUaCCUCGCCGUgCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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