miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10866 3' -57.7 NC_002794.1 + 130652 0.66 0.901346
Target:  5'- cCGCcgCCCCGccGCcggCCGCGGGCUccGCc -3'
miRNA:   3'- -GCGuaGGGGU--UGa--GGUGCCUGGa-CGu -5'
10866 3' -57.7 NC_002794.1 + 38713 0.66 0.901346
Target:  5'- aGCG-CCCCGGCcgCCGaaauggGGACCUcGCAc -3'
miRNA:   3'- gCGUaGGGGUUGa-GGUg-----CCUGGA-CGU- -5'
10866 3' -57.7 NC_002794.1 + 82934 0.66 0.901346
Target:  5'- uCGCcgCUCCGACUCCA-GGcCCgccGCGc -3'
miRNA:   3'- -GCGuaGGGGUUGAGGUgCCuGGa--CGU- -5'
10866 3' -57.7 NC_002794.1 + 122753 0.66 0.901346
Target:  5'- gGCAUCCUCGagcugaucgagcGCUCCGCGagcGGCCUcgacgGCGu -3'
miRNA:   3'- gCGUAGGGGU------------UGAGGUGC---CUGGA-----CGU- -5'
10866 3' -57.7 NC_002794.1 + 8155 0.66 0.901346
Target:  5'- cCGCuUCUCCuuCUCCccCGGGCCcgGCGu -3'
miRNA:   3'- -GCGuAGGGGuuGAGGu-GCCUGGa-CGU- -5'
10866 3' -57.7 NC_002794.1 + 66204 0.66 0.884507
Target:  5'- cCGCAUCCCCGGgaaagcucaccuccuCUCCuucuuCGGccgggcGCUUGCGg -3'
miRNA:   3'- -GCGUAGGGGUU---------------GAGGu----GCC------UGGACGU- -5'
10866 3' -57.7 NC_002794.1 + 18890 0.66 0.881787
Target:  5'- gCGCGgagcgucaccccUCCCCGACggcgCC-CGGACUgGCGc -3'
miRNA:   3'- -GCGU------------AGGGGUUGa---GGuGCCUGGaCGU- -5'
10866 3' -57.7 NC_002794.1 + 68240 0.66 0.881787
Target:  5'- aCGCAgcgCCCCGAcCUCCcCcu-CCUGCAg -3'
miRNA:   3'- -GCGUa--GGGGUU-GAGGuGccuGGACGU- -5'
10866 3' -57.7 NC_002794.1 + 184169 0.66 0.874841
Target:  5'- gGCGUCuccaCCCGACaCCGCGGcGCCcgGCGa -3'
miRNA:   3'- gCGUAG----GGGUUGaGGUGCC-UGGa-CGU- -5'
10866 3' -57.7 NC_002794.1 + 60078 0.66 0.874841
Target:  5'- cCGCcgCCCgCGcagguGCUCCACGG-CCaGCu -3'
miRNA:   3'- -GCGuaGGG-GU-----UGAGGUGCCuGGaCGu -5'
10866 3' -57.7 NC_002794.1 + 34941 0.66 0.874841
Target:  5'- gGCuGUCCCCGGC-CCGCcGcGACCcGCGc -3'
miRNA:   3'- gCG-UAGGGGUUGaGGUG-C-CUGGaCGU- -5'
10866 3' -57.7 NC_002794.1 + 96630 0.66 0.874841
Target:  5'- gGCGUCUggAAgUCCAaGGACCUGUAu -3'
miRNA:   3'- gCGUAGGggUUgAGGUgCCUGGACGU- -5'
10866 3' -57.7 NC_002794.1 + 73760 0.66 0.874841
Target:  5'- aCGCGUCUUCGaggaacuggcGCUCCA-GGuCCUGCu -3'
miRNA:   3'- -GCGUAGGGGU----------UGAGGUgCCuGGACGu -5'
10866 3' -57.7 NC_002794.1 + 12596 0.66 0.874135
Target:  5'- uGCGUCCCCAcgcugcgccaccaGCgcgUCugGGGCC-GCu -3'
miRNA:   3'- gCGUAGGGGU-------------UGa--GGugCCUGGaCGu -5'
10866 3' -57.7 NC_002794.1 + 123899 0.66 0.86769
Target:  5'- cCGCccgCCCgAGCUgCCGCcucgcgccGGACCUGCc -3'
miRNA:   3'- -GCGua-GGGgUUGA-GGUG--------CCUGGACGu -5'
10866 3' -57.7 NC_002794.1 + 183631 0.66 0.86769
Target:  5'- cCGCGcCCCCGACUCgaGCaGGGCC-GCc -3'
miRNA:   3'- -GCGUaGGGGUUGAGg-UG-CCUGGaCGu -5'
10866 3' -57.7 NC_002794.1 + 73255 0.66 0.86769
Target:  5'- uCGUcUCCCCGACcccaccUCCGCcGACCgcgGCGa -3'
miRNA:   3'- -GCGuAGGGGUUG------AGGUGcCUGGa--CGU- -5'
10866 3' -57.7 NC_002794.1 + 40615 0.67 0.852789
Target:  5'- gGCGUCC--GACUCCGCGGAguCC-GCGa -3'
miRNA:   3'- gCGUAGGggUUGAGGUGCCU--GGaCGU- -5'
10866 3' -57.7 NC_002794.1 + 148307 0.67 0.852789
Target:  5'- uGUAcgaCCCCGACggccgaCCGCGGuucgACCUGCGu -3'
miRNA:   3'- gCGUa--GGGGUUGa-----GGUGCC----UGGACGU- -5'
10866 3' -57.7 NC_002794.1 + 114414 0.67 0.852789
Target:  5'- gCGCGUCguaaCaCAGC-CCGCGGACCaGCu -3'
miRNA:   3'- -GCGUAGg---G-GUUGaGGUGCCUGGaCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.