Results 1 - 20 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10866 | 3' | -57.7 | NC_002794.1 | + | 130652 | 0.66 | 0.901346 |
Target: 5'- cCGCcgCCCCGccGCcggCCGCGGGCUccGCc -3' miRNA: 3'- -GCGuaGGGGU--UGa--GGUGCCUGGa-CGu -5' |
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10866 | 3' | -57.7 | NC_002794.1 | + | 73255 | 0.66 | 0.86769 |
Target: 5'- uCGUcUCCCCGACcccaccUCCGCcGACCgcgGCGa -3' miRNA: 3'- -GCGuAGGGGUUG------AGGUGcCUGGa--CGU- -5' |
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10866 | 3' | -57.7 | NC_002794.1 | + | 12596 | 0.66 | 0.874135 |
Target: 5'- uGCGUCCCCAcgcugcgccaccaGCgcgUCugGGGCC-GCu -3' miRNA: 3'- gCGUAGGGGU-------------UGa--GGugCCUGGaCGu -5' |
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10866 | 3' | -57.7 | NC_002794.1 | + | 183631 | 0.66 | 0.86769 |
Target: 5'- cCGCGcCCCCGACUCgaGCaGGGCC-GCc -3' miRNA: 3'- -GCGUaGGGGUUGAGg-UG-CCUGGaCGu -5' |
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10866 | 3' | -57.7 | NC_002794.1 | + | 123899 | 0.66 | 0.86769 |
Target: 5'- cCGCccgCCCgAGCUgCCGCcucgcgccGGACCUGCc -3' miRNA: 3'- -GCGua-GGGgUUGA-GGUG--------CCUGGACGu -5' |
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10866 | 3' | -57.7 | NC_002794.1 | + | 184169 | 0.66 | 0.874841 |
Target: 5'- gGCGUCuccaCCCGACaCCGCGGcGCCcgGCGa -3' miRNA: 3'- gCGUAG----GGGUUGaGGUGCC-UGGa-CGU- -5' |
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10866 | 3' | -57.7 | NC_002794.1 | + | 60078 | 0.66 | 0.874841 |
Target: 5'- cCGCcgCCCgCGcagguGCUCCACGG-CCaGCu -3' miRNA: 3'- -GCGuaGGG-GU-----UGAGGUGCCuGGaCGu -5' |
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10866 | 3' | -57.7 | NC_002794.1 | + | 34941 | 0.66 | 0.874841 |
Target: 5'- gGCuGUCCCCGGC-CCGCcGcGACCcGCGc -3' miRNA: 3'- gCG-UAGGGGUUGaGGUG-C-CUGGaCGU- -5' |
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10866 | 3' | -57.7 | NC_002794.1 | + | 68240 | 0.66 | 0.881787 |
Target: 5'- aCGCAgcgCCCCGAcCUCCcCcu-CCUGCAg -3' miRNA: 3'- -GCGUa--GGGGUU-GAGGuGccuGGACGU- -5' |
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10866 | 3' | -57.7 | NC_002794.1 | + | 96630 | 0.66 | 0.874841 |
Target: 5'- gGCGUCUggAAgUCCAaGGACCUGUAu -3' miRNA: 3'- gCGUAGGggUUgAGGUgCCUGGACGU- -5' |
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10866 | 3' | -57.7 | NC_002794.1 | + | 8155 | 0.66 | 0.901346 |
Target: 5'- cCGCuUCUCCuuCUCCccCGGGCCcgGCGu -3' miRNA: 3'- -GCGuAGGGGuuGAGGu-GCCUGGa-CGU- -5' |
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10866 | 3' | -57.7 | NC_002794.1 | + | 122753 | 0.66 | 0.901346 |
Target: 5'- gGCAUCCUCGagcugaucgagcGCUCCGCGagcGGCCUcgacgGCGu -3' miRNA: 3'- gCGUAGGGGU------------UGAGGUGC---CUGGA-----CGU- -5' |
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10866 | 3' | -57.7 | NC_002794.1 | + | 82934 | 0.66 | 0.901346 |
Target: 5'- uCGCcgCUCCGACUCCA-GGcCCgccGCGc -3' miRNA: 3'- -GCGuaGGGGUUGAGGUgCCuGGa--CGU- -5' |
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10866 | 3' | -57.7 | NC_002794.1 | + | 66204 | 0.66 | 0.884507 |
Target: 5'- cCGCAUCCCCGGgaaagcucaccuccuCUCCuucuuCGGccgggcGCUUGCGg -3' miRNA: 3'- -GCGUAGGGGUU---------------GAGGu----GCC------UGGACGU- -5' |
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10866 | 3' | -57.7 | NC_002794.1 | + | 38713 | 0.66 | 0.901346 |
Target: 5'- aGCG-CCCCGGCcgCCGaaauggGGACCUcGCAc -3' miRNA: 3'- gCGUaGGGGUUGa-GGUg-----CCUGGA-CGU- -5' |
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10866 | 3' | -57.7 | NC_002794.1 | + | 18890 | 0.66 | 0.881787 |
Target: 5'- gCGCGgagcgucaccccUCCCCGACggcgCC-CGGACUgGCGc -3' miRNA: 3'- -GCGU------------AGGGGUUGa---GGuGCCUGGaCGU- -5' |
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10866 | 3' | -57.7 | NC_002794.1 | + | 73760 | 0.66 | 0.874841 |
Target: 5'- aCGCGUCUUCGaggaacuggcGCUCCA-GGuCCUGCu -3' miRNA: 3'- -GCGUAGGGGU----------UGAGGUgCCuGGACGu -5' |
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10866 | 3' | -57.7 | NC_002794.1 | + | 148307 | 0.67 | 0.852789 |
Target: 5'- uGUAcgaCCCCGACggccgaCCGCGGuucgACCUGCGu -3' miRNA: 3'- gCGUa--GGGGUUGa-----GGUGCC----UGGACGU- -5' |
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10866 | 3' | -57.7 | NC_002794.1 | + | 40615 | 0.67 | 0.852789 |
Target: 5'- gGCGUCC--GACUCCGCGGAguCC-GCGa -3' miRNA: 3'- gCGUAGGggUUGAGGUGCCU--GGaCGU- -5' |
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10866 | 3' | -57.7 | NC_002794.1 | + | 114414 | 0.67 | 0.852789 |
Target: 5'- gCGCGUCguaaCaCAGC-CCGCGGACCaGCu -3' miRNA: 3'- -GCGUAGg---G-GUUGaGGUGCCUGGaCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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