Results 21 - 40 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10866 | 3' | -57.7 | NC_002794.1 | + | 116942 | 0.67 | 0.828213 |
Target: 5'- gGCGUCCCCGGCggcggcgUCgGCGGGC--GCAg -3' miRNA: 3'- gCGUAGGGGUUG-------AGgUGCCUGgaCGU- -5' |
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10866 | 3' | -57.7 | NC_002794.1 | + | 114414 | 0.67 | 0.852789 |
Target: 5'- gCGCGUCguaaCaCAGC-CCGCGGACCaGCu -3' miRNA: 3'- -GCGUAGg---G-GUUGaGGUGCCUGGaCGu -5' |
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10866 | 3' | -57.7 | NC_002794.1 | + | 40615 | 0.67 | 0.852789 |
Target: 5'- gGCGUCC--GACUCCGCGGAguCC-GCGa -3' miRNA: 3'- gCGUAGGggUUGAGGUGCCU--GGaCGU- -5' |
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10866 | 3' | -57.7 | NC_002794.1 | + | 148307 | 0.67 | 0.852789 |
Target: 5'- uGUAcgaCCCCGACggccgaCCGCGGuucgACCUGCGu -3' miRNA: 3'- gCGUa--GGGGUUGa-----GGUGCC----UGGACGU- -5' |
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10866 | 3' | -57.7 | NC_002794.1 | + | 183535 | 0.67 | 0.852789 |
Target: 5'- gCGCG-CCCCGuccGC-CCGgGGACaCUGCGc -3' miRNA: 3'- -GCGUaGGGGU---UGaGGUgCCUG-GACGU- -5' |
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10866 | 3' | -57.7 | NC_002794.1 | + | 192334 | 0.68 | 0.777136 |
Target: 5'- cCGCuUCCUCcuCUUCGCGGACCUcgGCc -3' miRNA: 3'- -GCGuAGGGGuuGAGGUGCCUGGA--CGu -5' |
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10866 | 3' | -57.7 | NC_002794.1 | + | 59645 | 0.68 | 0.786141 |
Target: 5'- aGCucUCCCCggUcgCCACGGcgcugcagagccGCCUGCGc -3' miRNA: 3'- gCGu-AGGGGuuGa-GGUGCC------------UGGACGU- -5' |
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10866 | 3' | -57.7 | NC_002794.1 | + | 112154 | 0.68 | 0.786141 |
Target: 5'- aCGCGUagaCCCCGacgagGCUCUGCGcGGCCaGCAg -3' miRNA: 3'- -GCGUA---GGGGU-----UGAGGUGC-CUGGaCGU- -5' |
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10866 | 3' | -57.7 | NC_002794.1 | + | 59869 | 0.68 | 0.786141 |
Target: 5'- gGCuacaccUCCCCAcCUgCACGGcgcACCUGCGc -3' miRNA: 3'- gCGu-----AGGGGUuGAgGUGCC---UGGACGU- -5' |
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10866 | 3' | -57.7 | NC_002794.1 | + | 2631 | 0.68 | 0.810628 |
Target: 5'- gCGCGUCCCCAgcaaaugaggaGCUCCucgagucgcgucCGGACUauaagGCAg -3' miRNA: 3'- -GCGUAGGGGU-----------UGAGGu-----------GCCUGGa----CGU- -5' |
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10866 | 3' | -57.7 | NC_002794.1 | + | 160378 | 0.68 | 0.803747 |
Target: 5'- gGCGUCUCCGACgaaCACGGuACCcGUg -3' miRNA: 3'- gCGUAGGGGUUGag-GUGCC-UGGaCGu -5' |
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10866 | 3' | -57.7 | NC_002794.1 | + | 194727 | 0.68 | 0.795014 |
Target: 5'- cCGCGUCaCgAACUCCACGcACCgcUGCAg -3' miRNA: 3'- -GCGUAGgGgUUGAGGUGCcUGG--ACGU- -5' |
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10866 | 3' | -57.7 | NC_002794.1 | + | 138742 | 0.69 | 0.730435 |
Target: 5'- gGgGUCCCCGGCccUCCGgGGGCCgagucGCGg -3' miRNA: 3'- gCgUAGGGGUUG--AGGUgCCUGGa----CGU- -5' |
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10866 | 3' | -57.7 | NC_002794.1 | + | 124625 | 0.69 | 0.730435 |
Target: 5'- aGCuUCCugCCGGCgcccgCCAUGGugCUGCAg -3' miRNA: 3'- gCGuAGG--GGUUGa----GGUGCCugGACGU- -5' |
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10866 | 3' | -57.7 | NC_002794.1 | + | 151575 | 0.69 | 0.724674 |
Target: 5'- aGCGccCCCCGGCggcgcgcgccgccgCCGCGGGCCcGCGg -3' miRNA: 3'- gCGUa-GGGGUUGa-------------GGUGCCUGGaCGU- -5' |
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10866 | 3' | -57.7 | NC_002794.1 | + | 120479 | 0.69 | 0.739971 |
Target: 5'- gCGCggCCCCGcCUgCACGaGGCgCUGCAg -3' miRNA: 3'- -GCGuaGGGGUuGAgGUGC-CUG-GACGU- -5' |
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10866 | 3' | -57.7 | NC_002794.1 | + | 11142 | 0.69 | 0.749417 |
Target: 5'- cCGCA-CCUCGAcCUCCAUGGACuaucuCUGCu -3' miRNA: 3'- -GCGUaGGGGUU-GAGGUGCCUG-----GACGu -5' |
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10866 | 3' | -57.7 | NC_002794.1 | + | 113657 | 0.69 | 0.749417 |
Target: 5'- gGCGUCCUCGGCgUCCAgCGcGGCgaGCAg -3' miRNA: 3'- gCGUAGGGGUUG-AGGU-GC-CUGgaCGU- -5' |
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10866 | 3' | -57.7 | NC_002794.1 | + | 142898 | 0.69 | 0.739971 |
Target: 5'- gGCGUgCCCGGCguccUCCGgGGGCCggaGCAg -3' miRNA: 3'- gCGUAgGGGUUG----AGGUgCCUGGa--CGU- -5' |
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10866 | 3' | -57.7 | NC_002794.1 | + | 51426 | 0.69 | 0.749417 |
Target: 5'- uCGCucuUCCCCGcagaGCaUCCGCGGAcagaauuuccaCCUGCu -3' miRNA: 3'- -GCGu--AGGGGU----UG-AGGUGCCU-----------GGACGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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