miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10866 3' -57.7 NC_002794.1 + 33606 1.09 0.002787
Target:  5'- gCGCAUCCCCAACUCCACGGACCUGCAg -3'
miRNA:   3'- -GCGUAGGGGUUGAGGUGCCUGGACGU- -5'
10866 3' -57.7 NC_002794.1 + 72301 0.75 0.432123
Target:  5'- uCGCGUCCCgCAGCUgCCGCaGACCUuGUAa -3'
miRNA:   3'- -GCGUAGGG-GUUGA-GGUGcCUGGA-CGU- -5'
10866 3' -57.7 NC_002794.1 + 68927 0.74 0.440882
Target:  5'- gGCGUCCUCGucGC-CCGCGGGCCgcgGCGc -3'
miRNA:   3'- gCGUAGGGGU--UGaGGUGCCUGGa--CGU- -5'
10866 3' -57.7 NC_002794.1 + 71376 0.74 0.476892
Target:  5'- aGCcgCCCCAGgaccucCUCCACGG-UCUGCGg -3'
miRNA:   3'- gCGuaGGGGUU------GAGGUGCCuGGACGU- -5'
10866 3' -57.7 NC_002794.1 + 21695 0.74 0.486122
Target:  5'- gGC-UCCCCGccucgGCgUCCACGGGCgCUGCGu -3'
miRNA:   3'- gCGuAGGGGU-----UG-AGGUGCCUG-GACGU- -5'
10866 3' -57.7 NC_002794.1 + 61054 0.73 0.50483
Target:  5'- gGCAUCCCCG--UgCACGGGCaCUGCu -3'
miRNA:   3'- gCGUAGGGGUugAgGUGCCUG-GACGu -5'
10866 3' -57.7 NC_002794.1 + 62391 0.73 0.523841
Target:  5'- uGCAcCUCCGACUgaccgCCuCGGACCUGCGg -3'
miRNA:   3'- gCGUaGGGGUUGA-----GGuGCCUGGACGU- -5'
10866 3' -57.7 NC_002794.1 + 119679 0.73 0.533449
Target:  5'- gGCGUCCCCGGCgucUCCGgcugcUGGGCCgGCGg -3'
miRNA:   3'- gCGUAGGGGUUG---AGGU-----GCCUGGaCGU- -5'
10866 3' -57.7 NC_002794.1 + 68959 0.72 0.57245
Target:  5'- gCGCcUCuCCCucCUCCGCGGGCC-GCGa -3'
miRNA:   3'- -GCGuAG-GGGuuGAGGUGCCUGGaCGU- -5'
10866 3' -57.7 NC_002794.1 + 18736 0.72 0.57245
Target:  5'- aGCcgCCCCAACgCCACGacGGCCggcgGCAa -3'
miRNA:   3'- gCGuaGGGGUUGaGGUGC--CUGGa---CGU- -5'
10866 3' -57.7 NC_002794.1 + 15219 0.71 0.62205
Target:  5'- gGCGUCCCCcg-UCCGCGGG-CUGCc -3'
miRNA:   3'- gCGUAGGGGuugAGGUGCCUgGACGu -5'
10866 3' -57.7 NC_002794.1 + 60563 0.71 0.632019
Target:  5'- gGCcuaCCCCAucuacaugaGCUCCAcgcCGGGCCUGCu -3'
miRNA:   3'- gCGua-GGGGU---------UGAGGU---GCCUGGACGu -5'
10866 3' -57.7 NC_002794.1 + 83448 0.71 0.632019
Target:  5'- gGCAUCCaCCcgaagauCUCCAagggGGACCUGCu -3'
miRNA:   3'- gCGUAGG-GGuu-----GAGGUg---CCUGGACGu -5'
10866 3' -57.7 NC_002794.1 + 108923 0.7 0.671821
Target:  5'- aCGCgaucGUCCCCuGCUCUucuCGGACgUGCu -3'
miRNA:   3'- -GCG----UAGGGGuUGAGGu--GCCUGgACGu -5'
10866 3' -57.7 NC_002794.1 + 153000 0.7 0.671821
Target:  5'- uCGUAUCUCCAGCaCgGCGGACUggGCGa -3'
miRNA:   3'- -GCGUAGGGGUUGaGgUGCCUGGa-CGU- -5'
10866 3' -57.7 NC_002794.1 + 26095 0.7 0.681715
Target:  5'- gCGCcgacggCCCCGGCgaucgCCGUGGGCCUGCc -3'
miRNA:   3'- -GCGua----GGGGUUGa----GGUGCCUGGACGu -5'
10866 3' -57.7 NC_002794.1 + 195572 0.7 0.691569
Target:  5'- aGCcgCCCCGACcgaCCGcCGGACCgGCc -3'
miRNA:   3'- gCGuaGGGGUUGa--GGU-GCCUGGaCGu -5'
10866 3' -57.7 NC_002794.1 + 77036 0.7 0.691569
Target:  5'- cCGCucGUCCCCGcuCgugCCGCGGACC-GCGu -3'
miRNA:   3'- -GCG--UAGGGGUu-Ga--GGUGCCUGGaCGU- -5'
10866 3' -57.7 NC_002794.1 + 176757 0.7 0.71113
Target:  5'- gGCAUCCCCGAacgUCgAUGGACCgGaCAc -3'
miRNA:   3'- gCGUAGGGGUUg--AGgUGCCUGGaC-GU- -5'
10866 3' -57.7 NC_002794.1 + 151575 0.69 0.724674
Target:  5'- aGCGccCCCCGGCggcgcgcgccgccgCCGCGGGCCcGCGg -3'
miRNA:   3'- gCGUa-GGGGUUGa-------------GGUGCCUGGaCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.