miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10866 3' -57.7 NC_002794.1 + 183535 0.67 0.852789
Target:  5'- gCGCG-CCCCGuccGC-CCGgGGACaCUGCGc -3'
miRNA:   3'- -GCGUaGGGGU---UGaGGUgCCUG-GACGU- -5'
10866 3' -57.7 NC_002794.1 + 183129 0.67 0.836328
Target:  5'- gGCGgcUCCCguacgcgCAGCUCCGCGGACaC-GCGg -3'
miRNA:   3'- gCGU--AGGG-------GUUGAGGUGCCUG-GaCGU- -5'
10866 3' -57.7 NC_002794.1 + 136321 0.67 0.829032
Target:  5'- aGCG-CCCgCAGCUCUucucggugGCGGGCCaGCGu -3'
miRNA:   3'- gCGUaGGG-GUUGAGG--------UGCCUGGaCGU- -5'
10866 3' -57.7 NC_002794.1 + 116942 0.67 0.828213
Target:  5'- gGCGUCCCCGGCggcggcgUCgGCGGGC--GCAg -3'
miRNA:   3'- gCGUAGGGGUUG-------AGgUGCCUGgaCGU- -5'
10866 3' -57.7 NC_002794.1 + 123506 0.67 0.820764
Target:  5'- uGCAUCgCCgGGCUgC-CGG-CCUGCAg -3'
miRNA:   3'- gCGUAG-GGgUUGAgGuGCCuGGACGU- -5'
10866 3' -57.7 NC_002794.1 + 2631 0.68 0.810628
Target:  5'- gCGCGUCCCCAgcaaaugaggaGCUCCucgagucgcgucCGGACUauaagGCAg -3'
miRNA:   3'- -GCGUAGGGGU-----------UGAGGu-----------GCCUGGa----CGU- -5'
10866 3' -57.7 NC_002794.1 + 160378 0.68 0.803747
Target:  5'- gGCGUCUCCGACgaaCACGGuACCcGUg -3'
miRNA:   3'- gCGUAGGGGUUGag-GUGCC-UGGaCGu -5'
10866 3' -57.7 NC_002794.1 + 194727 0.68 0.795014
Target:  5'- cCGCGUCaCgAACUCCACGcACCgcUGCAg -3'
miRNA:   3'- -GCGUAGgGgUUGAGGUGCcUGG--ACGU- -5'
10866 3' -57.7 NC_002794.1 + 59645 0.68 0.786141
Target:  5'- aGCucUCCCCggUcgCCACGGcgcugcagagccGCCUGCGc -3'
miRNA:   3'- gCGu-AGGGGuuGa-GGUGCC------------UGGACGU- -5'
10866 3' -57.7 NC_002794.1 + 112154 0.68 0.786141
Target:  5'- aCGCGUagaCCCCGacgagGCUCUGCGcGGCCaGCAg -3'
miRNA:   3'- -GCGUA---GGGGU-----UGAGGUGC-CUGGaCGU- -5'
10866 3' -57.7 NC_002794.1 + 59869 0.68 0.786141
Target:  5'- gGCuacaccUCCCCAcCUgCACGGcgcACCUGCGc -3'
miRNA:   3'- gCGu-----AGGGGUuGAgGUGCC---UGGACGU- -5'
10866 3' -57.7 NC_002794.1 + 192334 0.68 0.777136
Target:  5'- cCGCuUCCUCcuCUUCGCGGACCUcgGCc -3'
miRNA:   3'- -GCGuAGGGGuuGAGGUGCCUGGA--CGu -5'
10866 3' -57.7 NC_002794.1 + 11142 0.69 0.749417
Target:  5'- cCGCA-CCUCGAcCUCCAUGGACuaucuCUGCu -3'
miRNA:   3'- -GCGUaGGGGUU-GAGGUGCCUG-----GACGu -5'
10866 3' -57.7 NC_002794.1 + 113657 0.69 0.749417
Target:  5'- gGCGUCCUCGGCgUCCAgCGcGGCgaGCAg -3'
miRNA:   3'- gCGUAGGGGUUG-AGGU-GC-CUGgaCGU- -5'
10866 3' -57.7 NC_002794.1 + 51426 0.69 0.749417
Target:  5'- uCGCucuUCCCCGcagaGCaUCCGCGGAcagaauuuccaCCUGCu -3'
miRNA:   3'- -GCGu--AGGGGU----UG-AGGUGCCU-----------GGACGu -5'
10866 3' -57.7 NC_002794.1 + 142898 0.69 0.739971
Target:  5'- gGCGUgCCCGGCguccUCCGgGGGCCggaGCAg -3'
miRNA:   3'- gCGUAgGGGUUG----AGGUgCCUGGa--CGU- -5'
10866 3' -57.7 NC_002794.1 + 120479 0.69 0.739971
Target:  5'- gCGCggCCCCGcCUgCACGaGGCgCUGCAg -3'
miRNA:   3'- -GCGuaGGGGUuGAgGUGC-CUG-GACGU- -5'
10866 3' -57.7 NC_002794.1 + 124625 0.69 0.730435
Target:  5'- aGCuUCCugCCGGCgcccgCCAUGGugCUGCAg -3'
miRNA:   3'- gCGuAGG--GGUUGa----GGUGCCugGACGU- -5'
10866 3' -57.7 NC_002794.1 + 138742 0.69 0.730435
Target:  5'- gGgGUCCCCGGCccUCCGgGGGCCgagucGCGg -3'
miRNA:   3'- gCgUAGGGGUUG--AGGUgCCUGGa----CGU- -5'
10866 3' -57.7 NC_002794.1 + 151575 0.69 0.724674
Target:  5'- aGCGccCCCCGGCggcgcgcgccgccgCCGCGGGCCcGCGg -3'
miRNA:   3'- gCGUa-GGGGUUGa-------------GGUGCCUGGaCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.