miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10866 3' -57.7 NC_002794.1 + 2631 0.68 0.810628
Target:  5'- gCGCGUCCCCAgcaaaugaggaGCUCCucgagucgcgucCGGACUauaagGCAg -3'
miRNA:   3'- -GCGUAGGGGU-----------UGAGGu-----------GCCUGGa----CGU- -5'
10866 3' -57.7 NC_002794.1 + 8155 0.66 0.901346
Target:  5'- cCGCuUCUCCuuCUCCccCGGGCCcgGCGu -3'
miRNA:   3'- -GCGuAGGGGuuGAGGu-GCCUGGa-CGU- -5'
10866 3' -57.7 NC_002794.1 + 11142 0.69 0.749417
Target:  5'- cCGCA-CCUCGAcCUCCAUGGACuaucuCUGCu -3'
miRNA:   3'- -GCGUaGGGGUU-GAGGUGCCUG-----GACGu -5'
10866 3' -57.7 NC_002794.1 + 12596 0.66 0.874135
Target:  5'- uGCGUCCCCAcgcugcgccaccaGCgcgUCugGGGCC-GCu -3'
miRNA:   3'- gCGUAGGGGU-------------UGa--GGugCCUGGaCGu -5'
10866 3' -57.7 NC_002794.1 + 15219 0.71 0.62205
Target:  5'- gGCGUCCCCcg-UCCGCGGG-CUGCc -3'
miRNA:   3'- gCGUAGGGGuugAGGUGCCUgGACGu -5'
10866 3' -57.7 NC_002794.1 + 18736 0.72 0.57245
Target:  5'- aGCcgCCCCAACgCCACGacGGCCggcgGCAa -3'
miRNA:   3'- gCGuaGGGGUUGaGGUGC--CUGGa---CGU- -5'
10866 3' -57.7 NC_002794.1 + 18890 0.66 0.881787
Target:  5'- gCGCGgagcgucaccccUCCCCGACggcgCC-CGGACUgGCGc -3'
miRNA:   3'- -GCGU------------AGGGGUUGa---GGuGCCUGGaCGU- -5'
10866 3' -57.7 NC_002794.1 + 21695 0.74 0.486122
Target:  5'- gGC-UCCCCGccucgGCgUCCACGGGCgCUGCGu -3'
miRNA:   3'- gCGuAGGGGU-----UG-AGGUGCCUG-GACGU- -5'
10866 3' -57.7 NC_002794.1 + 26095 0.7 0.681715
Target:  5'- gCGCcgacggCCCCGGCgaucgCCGUGGGCCUGCc -3'
miRNA:   3'- -GCGua----GGGGUUGa----GGUGCCUGGACGu -5'
10866 3' -57.7 NC_002794.1 + 33606 1.09 0.002787
Target:  5'- gCGCAUCCCCAACUCCACGGACCUGCAg -3'
miRNA:   3'- -GCGUAGGGGUUGAGGUGCCUGGACGU- -5'
10866 3' -57.7 NC_002794.1 + 34941 0.66 0.874841
Target:  5'- gGCuGUCCCCGGC-CCGCcGcGACCcGCGc -3'
miRNA:   3'- gCG-UAGGGGUUGaGGUG-C-CUGGaCGU- -5'
10866 3' -57.7 NC_002794.1 + 38713 0.66 0.901346
Target:  5'- aGCG-CCCCGGCcgCCGaaauggGGACCUcGCAc -3'
miRNA:   3'- gCGUaGGGGUUGa-GGUg-----CCUGGA-CGU- -5'
10866 3' -57.7 NC_002794.1 + 40615 0.67 0.852789
Target:  5'- gGCGUCC--GACUCCGCGGAguCC-GCGa -3'
miRNA:   3'- gCGUAGGggUUGAGGUGCCU--GGaCGU- -5'
10866 3' -57.7 NC_002794.1 + 51426 0.69 0.749417
Target:  5'- uCGCucuUCCCCGcagaGCaUCCGCGGAcagaauuuccaCCUGCu -3'
miRNA:   3'- -GCGu--AGGGGU----UG-AGGUGCCU-----------GGACGu -5'
10866 3' -57.7 NC_002794.1 + 59645 0.68 0.786141
Target:  5'- aGCucUCCCCggUcgCCACGGcgcugcagagccGCCUGCGc -3'
miRNA:   3'- gCGu-AGGGGuuGa-GGUGCC------------UGGACGU- -5'
10866 3' -57.7 NC_002794.1 + 59869 0.68 0.786141
Target:  5'- gGCuacaccUCCCCAcCUgCACGGcgcACCUGCGc -3'
miRNA:   3'- gCGu-----AGGGGUuGAgGUGCC---UGGACGU- -5'
10866 3' -57.7 NC_002794.1 + 60078 0.66 0.874841
Target:  5'- cCGCcgCCCgCGcagguGCUCCACGG-CCaGCu -3'
miRNA:   3'- -GCGuaGGG-GU-----UGAGGUGCCuGGaCGu -5'
10866 3' -57.7 NC_002794.1 + 60563 0.71 0.632019
Target:  5'- gGCcuaCCCCAucuacaugaGCUCCAcgcCGGGCCUGCu -3'
miRNA:   3'- gCGua-GGGGU---------UGAGGU---GCCUGGACGu -5'
10866 3' -57.7 NC_002794.1 + 61054 0.73 0.50483
Target:  5'- gGCAUCCCCG--UgCACGGGCaCUGCu -3'
miRNA:   3'- gCGUAGGGGUugAgGUGCCUG-GACGu -5'
10866 3' -57.7 NC_002794.1 + 62391 0.73 0.523841
Target:  5'- uGCAcCUCCGACUgaccgCCuCGGACCUGCGg -3'
miRNA:   3'- gCGUaGGGGUUGA-----GGuGCCUGGACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.