miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10866 3' -57.7 NC_002794.1 + 66204 0.66 0.884507
Target:  5'- cCGCAUCCCCGGgaaagcucaccuccuCUCCuucuuCGGccgggcGCUUGCGg -3'
miRNA:   3'- -GCGUAGGGGUU---------------GAGGu----GCC------UGGACGU- -5'
10866 3' -57.7 NC_002794.1 + 68240 0.66 0.881787
Target:  5'- aCGCAgcgCCCCGAcCUCCcCcu-CCUGCAg -3'
miRNA:   3'- -GCGUa--GGGGUU-GAGGuGccuGGACGU- -5'
10866 3' -57.7 NC_002794.1 + 68927 0.74 0.440882
Target:  5'- gGCGUCCUCGucGC-CCGCGGGCCgcgGCGc -3'
miRNA:   3'- gCGUAGGGGU--UGaGGUGCCUGGa--CGU- -5'
10866 3' -57.7 NC_002794.1 + 68959 0.72 0.57245
Target:  5'- gCGCcUCuCCCucCUCCGCGGGCC-GCGa -3'
miRNA:   3'- -GCGuAG-GGGuuGAGGUGCCUGGaCGU- -5'
10866 3' -57.7 NC_002794.1 + 71376 0.74 0.476892
Target:  5'- aGCcgCCCCAGgaccucCUCCACGG-UCUGCGg -3'
miRNA:   3'- gCGuaGGGGUU------GAGGUGCCuGGACGU- -5'
10866 3' -57.7 NC_002794.1 + 72301 0.75 0.432123
Target:  5'- uCGCGUCCCgCAGCUgCCGCaGACCUuGUAa -3'
miRNA:   3'- -GCGUAGGG-GUUGA-GGUGcCUGGA-CGU- -5'
10866 3' -57.7 NC_002794.1 + 73255 0.66 0.86769
Target:  5'- uCGUcUCCCCGACcccaccUCCGCcGACCgcgGCGa -3'
miRNA:   3'- -GCGuAGGGGUUG------AGGUGcCUGGa--CGU- -5'
10866 3' -57.7 NC_002794.1 + 73760 0.66 0.874841
Target:  5'- aCGCGUCUUCGaggaacuggcGCUCCA-GGuCCUGCu -3'
miRNA:   3'- -GCGUAGGGGU----------UGAGGUgCCuGGACGu -5'
10866 3' -57.7 NC_002794.1 + 77036 0.7 0.691569
Target:  5'- cCGCucGUCCCCGcuCgugCCGCGGACC-GCGu -3'
miRNA:   3'- -GCG--UAGGGGUu-Ga--GGUGCCUGGaCGU- -5'
10866 3' -57.7 NC_002794.1 + 82934 0.66 0.901346
Target:  5'- uCGCcgCUCCGACUCCA-GGcCCgccGCGc -3'
miRNA:   3'- -GCGuaGGGGUUGAGGUgCCuGGa--CGU- -5'
10866 3' -57.7 NC_002794.1 + 83448 0.71 0.632019
Target:  5'- gGCAUCCaCCcgaagauCUCCAagggGGACCUGCu -3'
miRNA:   3'- gCGUAGG-GGuu-----GAGGUg---CCUGGACGu -5'
10866 3' -57.7 NC_002794.1 + 96630 0.66 0.874841
Target:  5'- gGCGUCUggAAgUCCAaGGACCUGUAu -3'
miRNA:   3'- gCGUAGGggUUgAGGUgCCUGGACGU- -5'
10866 3' -57.7 NC_002794.1 + 108923 0.7 0.671821
Target:  5'- aCGCgaucGUCCCCuGCUCUucuCGGACgUGCu -3'
miRNA:   3'- -GCG----UAGGGGuUGAGGu--GCCUGgACGu -5'
10866 3' -57.7 NC_002794.1 + 112154 0.68 0.786141
Target:  5'- aCGCGUagaCCCCGacgagGCUCUGCGcGGCCaGCAg -3'
miRNA:   3'- -GCGUA---GGGGU-----UGAGGUGC-CUGGaCGU- -5'
10866 3' -57.7 NC_002794.1 + 113657 0.69 0.749417
Target:  5'- gGCGUCCUCGGCgUCCAgCGcGGCgaGCAg -3'
miRNA:   3'- gCGUAGGGGUUG-AGGU-GC-CUGgaCGU- -5'
10866 3' -57.7 NC_002794.1 + 114414 0.67 0.852789
Target:  5'- gCGCGUCguaaCaCAGC-CCGCGGACCaGCu -3'
miRNA:   3'- -GCGUAGg---G-GUUGaGGUGCCUGGaCGu -5'
10866 3' -57.7 NC_002794.1 + 116942 0.67 0.828213
Target:  5'- gGCGUCCCCGGCggcggcgUCgGCGGGC--GCAg -3'
miRNA:   3'- gCGUAGGGGUUG-------AGgUGCCUGgaCGU- -5'
10866 3' -57.7 NC_002794.1 + 119679 0.73 0.533449
Target:  5'- gGCGUCCCCGGCgucUCCGgcugcUGGGCCgGCGg -3'
miRNA:   3'- gCGUAGGGGUUG---AGGU-----GCCUGGaCGU- -5'
10866 3' -57.7 NC_002794.1 + 120479 0.69 0.739971
Target:  5'- gCGCggCCCCGcCUgCACGaGGCgCUGCAg -3'
miRNA:   3'- -GCGuaGGGGUuGAgGUGC-CUG-GACGU- -5'
10866 3' -57.7 NC_002794.1 + 122753 0.66 0.901346
Target:  5'- gGCAUCCUCGagcugaucgagcGCUCCGCGagcGGCCUcgacgGCGu -3'
miRNA:   3'- gCGUAGGGGU------------UGAGGUGC---CUGGA-----CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.