Results 1 - 20 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10866 | 3' | -57.7 | NC_002794.1 | + | 195572 | 0.7 | 0.691569 |
Target: 5'- aGCcgCCCCGACcgaCCGcCGGACCgGCc -3' miRNA: 3'- gCGuaGGGGUUGa--GGU-GCCUGGaCGu -5' |
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10866 | 3' | -57.7 | NC_002794.1 | + | 194727 | 0.68 | 0.795014 |
Target: 5'- cCGCGUCaCgAACUCCACGcACCgcUGCAg -3' miRNA: 3'- -GCGUAGgGgUUGAGGUGCcUGG--ACGU- -5' |
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10866 | 3' | -57.7 | NC_002794.1 | + | 192334 | 0.68 | 0.777136 |
Target: 5'- cCGCuUCCUCcuCUUCGCGGACCUcgGCc -3' miRNA: 3'- -GCGuAGGGGuuGAGGUGCCUGGA--CGu -5' |
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10866 | 3' | -57.7 | NC_002794.1 | + | 184169 | 0.66 | 0.874841 |
Target: 5'- gGCGUCuccaCCCGACaCCGCGGcGCCcgGCGa -3' miRNA: 3'- gCGUAG----GGGUUGaGGUGCC-UGGa-CGU- -5' |
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10866 | 3' | -57.7 | NC_002794.1 | + | 183631 | 0.66 | 0.86769 |
Target: 5'- cCGCGcCCCCGACUCgaGCaGGGCC-GCc -3' miRNA: 3'- -GCGUaGGGGUUGAGg-UG-CCUGGaCGu -5' |
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10866 | 3' | -57.7 | NC_002794.1 | + | 183535 | 0.67 | 0.852789 |
Target: 5'- gCGCG-CCCCGuccGC-CCGgGGACaCUGCGc -3' miRNA: 3'- -GCGUaGGGGU---UGaGGUgCCUG-GACGU- -5' |
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10866 | 3' | -57.7 | NC_002794.1 | + | 183129 | 0.67 | 0.836328 |
Target: 5'- gGCGgcUCCCguacgcgCAGCUCCGCGGACaC-GCGg -3' miRNA: 3'- gCGU--AGGG-------GUUGAGGUGCCUG-GaCGU- -5' |
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10866 | 3' | -57.7 | NC_002794.1 | + | 176757 | 0.7 | 0.71113 |
Target: 5'- gGCAUCCCCGAacgUCgAUGGACCgGaCAc -3' miRNA: 3'- gCGUAGGGGUUg--AGgUGCCUGGaC-GU- -5' |
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10866 | 3' | -57.7 | NC_002794.1 | + | 160378 | 0.68 | 0.803747 |
Target: 5'- gGCGUCUCCGACgaaCACGGuACCcGUg -3' miRNA: 3'- gCGUAGGGGUUGag-GUGCC-UGGaCGu -5' |
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10866 | 3' | -57.7 | NC_002794.1 | + | 153000 | 0.7 | 0.671821 |
Target: 5'- uCGUAUCUCCAGCaCgGCGGACUggGCGa -3' miRNA: 3'- -GCGUAGGGGUUGaGgUGCCUGGa-CGU- -5' |
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10866 | 3' | -57.7 | NC_002794.1 | + | 151575 | 0.69 | 0.724674 |
Target: 5'- aGCGccCCCCGGCggcgcgcgccgccgCCGCGGGCCcGCGg -3' miRNA: 3'- gCGUa-GGGGUUGa-------------GGUGCCUGGaCGU- -5' |
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10866 | 3' | -57.7 | NC_002794.1 | + | 148307 | 0.67 | 0.852789 |
Target: 5'- uGUAcgaCCCCGACggccgaCCGCGGuucgACCUGCGu -3' miRNA: 3'- gCGUa--GGGGUUGa-----GGUGCC----UGGACGU- -5' |
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10866 | 3' | -57.7 | NC_002794.1 | + | 142898 | 0.69 | 0.739971 |
Target: 5'- gGCGUgCCCGGCguccUCCGgGGGCCggaGCAg -3' miRNA: 3'- gCGUAgGGGUUG----AGGUgCCUGGa--CGU- -5' |
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10866 | 3' | -57.7 | NC_002794.1 | + | 138742 | 0.69 | 0.730435 |
Target: 5'- gGgGUCCCCGGCccUCCGgGGGCCgagucGCGg -3' miRNA: 3'- gCgUAGGGGUUG--AGGUgCCUGGa----CGU- -5' |
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10866 | 3' | -57.7 | NC_002794.1 | + | 136321 | 0.67 | 0.829032 |
Target: 5'- aGCG-CCCgCAGCUCUucucggugGCGGGCCaGCGu -3' miRNA: 3'- gCGUaGGG-GUUGAGG--------UGCCUGGaCGU- -5' |
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10866 | 3' | -57.7 | NC_002794.1 | + | 130652 | 0.66 | 0.901346 |
Target: 5'- cCGCcgCCCCGccGCcggCCGCGGGCUccGCc -3' miRNA: 3'- -GCGuaGGGGU--UGa--GGUGCCUGGa-CGu -5' |
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10866 | 3' | -57.7 | NC_002794.1 | + | 124625 | 0.69 | 0.730435 |
Target: 5'- aGCuUCCugCCGGCgcccgCCAUGGugCUGCAg -3' miRNA: 3'- gCGuAGG--GGUUGa----GGUGCCugGACGU- -5' |
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10866 | 3' | -57.7 | NC_002794.1 | + | 123899 | 0.66 | 0.86769 |
Target: 5'- cCGCccgCCCgAGCUgCCGCcucgcgccGGACCUGCc -3' miRNA: 3'- -GCGua-GGGgUUGA-GGUG--------CCUGGACGu -5' |
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10866 | 3' | -57.7 | NC_002794.1 | + | 123506 | 0.67 | 0.820764 |
Target: 5'- uGCAUCgCCgGGCUgC-CGG-CCUGCAg -3' miRNA: 3'- gCGUAG-GGgUUGAgGuGCCuGGACGU- -5' |
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10866 | 3' | -57.7 | NC_002794.1 | + | 122753 | 0.66 | 0.901346 |
Target: 5'- gGCAUCCUCGagcugaucgagcGCUCCGCGagcGGCCUcgacgGCGu -3' miRNA: 3'- gCGUAGGGGU------------UGAGGUGC---CUGGA-----CGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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