miRNA display CGI


Results 1 - 20 of 305 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10866 5' -63.1 NC_002794.1 + 110322 0.66 0.693539
Target:  5'- -uCGCCGCCGCgACGccGCGCGggGGGUc -3'
miRNA:   3'- ccGUGGCGGCG-UGCc-CGCGCgaCUCG- -5'
10866 5' -63.1 NC_002794.1 + 69501 0.66 0.693539
Target:  5'- cGCACCaCgCGCACGgucagguacGGCGCGUgcacgaGAGCc -3'
miRNA:   3'- cCGUGGcG-GCGUGC---------CCGCGCGa-----CUCG- -5'
10866 5' -63.1 NC_002794.1 + 112837 0.66 0.693539
Target:  5'- aGUACgGCUGCuCGucGGCGCGCcGcAGCa -3'
miRNA:   3'- cCGUGgCGGCGuGC--CCGCGCGaC-UCG- -5'
10866 5' -63.1 NC_002794.1 + 94962 0.66 0.693539
Target:  5'- uGGCGuCCuggaGCCGaCGCGGGgGCug-GAGCu -3'
miRNA:   3'- -CCGU-GG----CGGC-GUGCCCgCGcgaCUCG- -5'
10866 5' -63.1 NC_002794.1 + 143392 0.66 0.693539
Target:  5'- gGGUcaGCUGCUGCucgacCGGcGCGgGCcGGGCg -3'
miRNA:   3'- -CCG--UGGCGGCGu----GCC-CGCgCGaCUCG- -5'
10866 5' -63.1 NC_002794.1 + 111164 0.66 0.693539
Target:  5'- aGGCAgaCGCgGUGCaGGGCGCGCa---- -3'
miRNA:   3'- -CCGUg-GCGgCGUG-CCCGCGCGacucg -5'
10866 5' -63.1 NC_002794.1 + 178403 0.66 0.693539
Target:  5'- uGCAUCGUcgcuaagcguguCGCACGGacCGCGCgacGGGCg -3'
miRNA:   3'- cCGUGGCG------------GCGUGCCc-GCGCGa--CUCG- -5'
10866 5' -63.1 NC_002794.1 + 13279 0.66 0.690709
Target:  5'- cGGCcgcuguugACgGCgGCAUGGGCGCuucccccccgcccgGC-GAGCg -3'
miRNA:   3'- -CCG--------UGgCGgCGUGCCCGCG--------------CGaCUCG- -5'
10866 5' -63.1 NC_002794.1 + 34486 0.66 0.685039
Target:  5'- aGCugCGCCGCcaggugaccaaccaGGGCGCGgaGGa- -3'
miRNA:   3'- cCGugGCGGCGug------------CCCGCGCgaCUcg -5'
10866 5' -63.1 NC_002794.1 + 91124 0.66 0.684092
Target:  5'- uGGUGCCGUgcguggaggagGCGCGgacGGUGCuGCUGGGCg -3'
miRNA:   3'- -CCGUGGCGg----------CGUGC---CCGCG-CGACUCG- -5'
10866 5' -63.1 NC_002794.1 + 128320 0.66 0.684092
Target:  5'- uGGCgACCGagcCCGCcCGGaCGCGguggaCUGAGCa -3'
miRNA:   3'- -CCG-UGGC---GGCGuGCCcGCGC-----GACUCG- -5'
10866 5' -63.1 NC_002794.1 + 36358 0.66 0.684092
Target:  5'- uGCGCgGCCaC-CGGGUGCGCgcccgcGGCg -3'
miRNA:   3'- cCGUGgCGGcGuGCCCGCGCGac----UCG- -5'
10866 5' -63.1 NC_002794.1 + 104490 0.66 0.684092
Target:  5'- cGGCcacgGCgGCCGgGuCGGGCGagaacggGCUGAGg -3'
miRNA:   3'- -CCG----UGgCGGCgU-GCCCGCg------CGACUCg -5'
10866 5' -63.1 NC_002794.1 + 126704 0.66 0.684092
Target:  5'- gGGCGCCGCgGacuCGGG-GCGagggGGGUg -3'
miRNA:   3'- -CCGUGGCGgCgu-GCCCgCGCga--CUCG- -5'
10866 5' -63.1 NC_002794.1 + 136942 0.66 0.684092
Target:  5'- cGGCGCCGagauaguccCCGCAgGGGaCG-GUgacGAGCu -3'
miRNA:   3'- -CCGUGGC---------GGCGUgCCC-GCgCGa--CUCG- -5'
10866 5' -63.1 NC_002794.1 + 194870 0.66 0.684092
Target:  5'- cGCGCCGCgcgaUGCACaGGuCGCGC--AGCu -3'
miRNA:   3'- cCGUGGCG----GCGUGcCC-GCGCGacUCG- -5'
10866 5' -63.1 NC_002794.1 + 80516 0.66 0.674608
Target:  5'- uGCGCCGCgGCGCGcGaCGC-CUG-GCa -3'
miRNA:   3'- cCGUGGCGgCGUGC-CcGCGcGACuCG- -5'
10866 5' -63.1 NC_002794.1 + 142130 0.66 0.674608
Target:  5'- cGGCgGCCGaCCGC-CGGGUcacgGCGgaG-GCg -3'
miRNA:   3'- -CCG-UGGC-GGCGuGCCCG----CGCgaCuCG- -5'
10866 5' -63.1 NC_002794.1 + 104891 0.66 0.674608
Target:  5'- gGGC-CgGCCGCGa-GGCGCcgugcuGCUcGAGCa -3'
miRNA:   3'- -CCGuGgCGGCGUgcCCGCG------CGA-CUCG- -5'
10866 5' -63.1 NC_002794.1 + 751 0.66 0.674608
Target:  5'- gGGCuCUGCCGUuuugcCGGGCcCGCgGuGCa -3'
miRNA:   3'- -CCGuGGCGGCGu----GCCCGcGCGaCuCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.