miRNA display CGI


Results 1 - 20 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10866 5' -63.1 NC_002794.1 + 33640 1.13 0.000496
Target:  5'- cGGCACCGCCGCACGGGCGCGCUGAGCg -3'
miRNA:   3'- -CCGUGGCGGCGUGCCCGCGCGACUCG- -5'
10866 5' -63.1 NC_002794.1 + 107215 0.86 0.043661
Target:  5'- cGGCGCCGCCGgGCGGcGCGCGacggGGGCg -3'
miRNA:   3'- -CCGUGGCGGCgUGCC-CGCGCga--CUCG- -5'
10866 5' -63.1 NC_002794.1 + 58365 0.83 0.067784
Target:  5'- uGGCGCCGCCcgacuuccaggaggcGCGCGGGCGCcagcuGCUGgAGCa -3'
miRNA:   3'- -CCGUGGCGG---------------CGUGCCCGCG-----CGAC-UCG- -5'
10866 5' -63.1 NC_002794.1 + 66844 0.83 0.069506
Target:  5'- gGGCGCCGCCGUcggcgcggcgaggccGCGGcGUGCGgCUGAGCc -3'
miRNA:   3'- -CCGUGGCGGCG---------------UGCC-CGCGC-GACUCG- -5'
10866 5' -63.1 NC_002794.1 + 67851 0.8 0.099955
Target:  5'- cGGCGCCGCCGCGCGucacccGGCGCcaucccgaaGCUccGAGCg -3'
miRNA:   3'- -CCGUGGCGGCGUGC------CCGCG---------CGA--CUCG- -5'
10866 5' -63.1 NC_002794.1 + 102706 0.8 0.102449
Target:  5'- cGGCcggGCCGCCGgACGGGCGCGCcaacGCg -3'
miRNA:   3'- -CCG---UGGCGGCgUGCCCGCGCGacu-CG- -5'
10866 5' -63.1 NC_002794.1 + 55806 0.79 0.124003
Target:  5'- cGCAgCGCCggGCGCGGGCGCGCgcugauggcgaaGAGCa -3'
miRNA:   3'- cCGUgGCGG--CGUGCCCGCGCGa-----------CUCG- -5'
10866 5' -63.1 NC_002794.1 + 47418 0.79 0.124608
Target:  5'- cGGCGCCGUCGCGCGGaGCGCcagGCguuucaggacgGGGCa -3'
miRNA:   3'- -CCGUGGCGGCGUGCC-CGCG---CGa----------CUCG- -5'
10866 5' -63.1 NC_002794.1 + 98934 0.78 0.144062
Target:  5'- gGGCGCgGCCgggaagggGCugGGGCucGUGCUGGGCg -3'
miRNA:   3'- -CCGUGgCGG--------CGugCCCG--CGCGACUCG- -5'
10866 5' -63.1 NC_002794.1 + 185353 0.77 0.158535
Target:  5'- cGCGCCGCCGCgaGCGGGCcgaaCGCcgcGAGCg -3'
miRNA:   3'- cCGUGGCGGCG--UGCCCGc---GCGa--CUCG- -5'
10866 5' -63.1 NC_002794.1 + 47945 0.77 0.170239
Target:  5'- cGGCGCCGCgCGUcCcGGCGCcgGCUGGGCg -3'
miRNA:   3'- -CCGUGGCG-GCGuGcCCGCG--CGACUCG- -5'
10866 5' -63.1 NC_002794.1 + 58536 0.77 0.174309
Target:  5'- aGGCcuucGCCGCgGCGCGcgcgcugcuGGCGCGCUGcGCg -3'
miRNA:   3'- -CCG----UGGCGgCGUGC---------CCGCGCGACuCG- -5'
10866 5' -63.1 NC_002794.1 + 92254 0.76 0.187042
Target:  5'- cGGCGgCGUCGCugGcGGCgGCGCcGGGCg -3'
miRNA:   3'- -CCGUgGCGGCGugC-CCG-CGCGaCUCG- -5'
10866 5' -63.1 NC_002794.1 + 91279 0.76 0.191465
Target:  5'- cGGCGCgGCCuGUACGuGUcgGCGCUGAGCg -3'
miRNA:   3'- -CCGUGgCGG-CGUGCcCG--CGCGACUCG- -5'
10866 5' -63.1 NC_002794.1 + 184452 0.76 0.194616
Target:  5'- cGCGCCgcugccgcccgcggGCCGCGCGaacGGCGCGCgGGGCc -3'
miRNA:   3'- cCGUGG--------------CGGCGUGC---CCGCGCGaCUCG- -5'
10866 5' -63.1 NC_002794.1 + 111633 0.76 0.19598
Target:  5'- cGGcCGCCGCCGguCGGGCGcCGCggccGCg -3'
miRNA:   3'- -CC-GUGGCGGCguGCCCGC-GCGacu-CG- -5'
10866 5' -63.1 NC_002794.1 + 120482 0.76 0.200588
Target:  5'- cGGCcCCGCCuGCACGaGGCGCuGCagcccgUGGGCa -3'
miRNA:   3'- -CCGuGGCGG-CGUGC-CCGCG-CG------ACUCG- -5'
10866 5' -63.1 NC_002794.1 + 34711 0.76 0.200588
Target:  5'- aGGC-CCGCCggcgccacgagGCGCGGGCGgcCGCaGAGCg -3'
miRNA:   3'- -CCGuGGCGG-----------CGUGCCCGC--GCGaCUCG- -5'
10866 5' -63.1 NC_002794.1 + 139481 0.76 0.200588
Target:  5'- cGGUGgUGUagauggGCGCGGGCGCGCUGcAGCa -3'
miRNA:   3'- -CCGUgGCGg-----CGUGCCCGCGCGAC-UCG- -5'
10866 5' -63.1 NC_002794.1 + 192651 0.76 0.20529
Target:  5'- cGCGCCGCCGCGCGcucGCGCGaCUcGaAGCg -3'
miRNA:   3'- cCGUGGCGGCGUGCc--CGCGC-GA-C-UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.