miRNA display CGI


Results 21 - 40 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10866 5' -63.1 NC_002794.1 + 192651 0.76 0.20529
Target:  5'- cGCGCCGCCGCGCGcucGCGCGaCUcGaAGCg -3'
miRNA:   3'- cCGUGGCGGCGUGCc--CGCGC-GA-C-UCG- -5'
10866 5' -63.1 NC_002794.1 + 37739 0.75 0.209602
Target:  5'- cGGCGCCGCCggcggcgGCGCGgcGGCGCcgGCggGAGCg -3'
miRNA:   3'- -CCGUGGCGG-------CGUGC--CCGCG--CGa-CUCG- -5'
10866 5' -63.1 NC_002794.1 + 142 0.75 0.210086
Target:  5'- cGGgACCGCCGCAgGGGCGCacc-AGCa -3'
miRNA:   3'- -CCgUGGCGGCGUgCCCGCGcgacUCG- -5'
10866 5' -63.1 NC_002794.1 + 102631 0.75 0.210086
Target:  5'- uGGCGgucauCCGCCgGCugGcGGCGCGCUcggagGAGCu -3'
miRNA:   3'- -CCGU-----GGCGG-CGugC-CCGCGCGA-----CUCG- -5'
10866 5' -63.1 NC_002794.1 + 42666 0.75 0.214979
Target:  5'- cGGCGCCGCCgGCACGGGguaCGCcGAGa -3'
miRNA:   3'- -CCGUGGCGG-CGUGCCCgc-GCGaCUCg -5'
10866 5' -63.1 NC_002794.1 + 189463 0.75 0.21997
Target:  5'- aGCACgCGCCGaaaggcCGCGGGCGUcgugugcacccaGCUGGGCa -3'
miRNA:   3'- cCGUG-GCGGC------GUGCCCGCG------------CGACUCG- -5'
10866 5' -63.1 NC_002794.1 + 60669 0.75 0.21997
Target:  5'- cGCGCCGCCGCcgccuccgucgACGGgagccGCGCGCacuuUGGGCa -3'
miRNA:   3'- cCGUGGCGGCG-----------UGCC-----CGCGCG----ACUCG- -5'
10866 5' -63.1 NC_002794.1 + 82950 0.75 0.21997
Target:  5'- aGGC-CCGCCGCGCacGGCGCGCacgcGAcGCa -3'
miRNA:   3'- -CCGuGGCGGCGUGc-CCGCGCGa---CU-CG- -5'
10866 5' -63.1 NC_002794.1 + 113770 0.75 0.225059
Target:  5'- cGGCACCuGUCGCuucagcuccucGCGGGCGCGCUcucGGUc -3'
miRNA:   3'- -CCGUGG-CGGCG-----------UGCCCGCGCGAc--UCG- -5'
10866 5' -63.1 NC_002794.1 + 151058 0.75 0.230247
Target:  5'- uGCACgGCCGCGCaGGuCGCGgauuucCUGAGCa -3'
miRNA:   3'- cCGUGgCGGCGUGcCC-GCGC------GACUCG- -5'
10866 5' -63.1 NC_002794.1 + 57169 0.75 0.235003
Target:  5'- aGGCGCCGCCGCACuu-CGUGCUgcagacgcugcgcGAGCa -3'
miRNA:   3'- -CCGUGGCGGCGUGcccGCGCGA-------------CUCG- -5'
10866 5' -63.1 NC_002794.1 + 151592 0.74 0.240927
Target:  5'- cGCGCCGCCGcCGCGGGCcCGCgguuccucGGCu -3'
miRNA:   3'- cCGUGGCGGC-GUGCCCGcGCGac------UCG- -5'
10866 5' -63.1 NC_002794.1 + 143279 0.74 0.24642
Target:  5'- cGGCGCCgGCCGCucgggguCGGGCGgGUgcAGCg -3'
miRNA:   3'- -CCGUGG-CGGCGu------GCCCGCgCGacUCG- -5'
10866 5' -63.1 NC_002794.1 + 153416 0.74 0.24642
Target:  5'- aGCGCCG-CGCGCGGaGCcgaGCUGGGCg -3'
miRNA:   3'- cCGUGGCgGCGUGCC-CGcg-CGACUCG- -5'
10866 5' -63.1 NC_002794.1 + 37261 0.74 0.24642
Target:  5'- cGCucuCCGUCG-GCGGGCGCGC-GGGCg -3'
miRNA:   3'- cCGu--GGCGGCgUGCCCGCGCGaCUCG- -5'
10866 5' -63.1 NC_002794.1 + 108460 0.74 0.252016
Target:  5'- cGGC-CCGCCgGCACGGGC-CGagGGGCg -3'
miRNA:   3'- -CCGuGGCGG-CGUGCCCGcGCgaCUCG- -5'
10866 5' -63.1 NC_002794.1 + 101610 0.74 0.256569
Target:  5'- cGGC-CCGCCGgGCGGGgGUGCcguuucguccgcGAGCg -3'
miRNA:   3'- -CCGuGGCGGCgUGCCCgCGCGa-----------CUCG- -5'
10866 5' -63.1 NC_002794.1 + 53245 0.74 0.257717
Target:  5'- cGGC-CCGCCGCGCcGGCGuCGCcGcGCg -3'
miRNA:   3'- -CCGuGGCGGCGUGcCCGC-GCGaCuCG- -5'
10866 5' -63.1 NC_002794.1 + 91764 0.74 0.269435
Target:  5'- cGGCACCGCgcaGgACGGGC-UGCUGAagGCg -3'
miRNA:   3'- -CCGUGGCGg--CgUGCCCGcGCGACU--CG- -5'
10866 5' -63.1 NC_002794.1 + 187922 0.74 0.273636
Target:  5'- gGGCcCCGCCGCgaccgucgcgucacGCGuGCGCGCgcGAGCg -3'
miRNA:   3'- -CCGuGGCGGCG--------------UGCcCGCGCGa-CUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.