miRNA display CGI


Results 21 - 40 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10866 5' -63.1 NC_002794.1 + 35773 0.66 0.665093
Target:  5'- cGGCACCGUCGCcgGCGucgucuccGGCGUGaccCUGcGCc -3'
miRNA:   3'- -CCGUGGCGGCG--UGC--------CCGCGC---GACuCG- -5'
10866 5' -63.1 NC_002794.1 + 36322 0.66 0.665093
Target:  5'- -aCGCCGUCGaACGGcGCGCaGUcGAGCa -3'
miRNA:   3'- ccGUGGCGGCgUGCC-CGCG-CGaCUCG- -5'
10866 5' -63.1 NC_002794.1 + 21694 0.66 0.665093
Target:  5'- cGGCuccCCGCCucggcgucCACGGGCGCuGCgucGCg -3'
miRNA:   3'- -CCGu--GGCGGc-------GUGCCCGCG-CGacuCG- -5'
10866 5' -63.1 NC_002794.1 + 114349 0.66 0.665093
Target:  5'- cGGCucguCCGCCGC-CaGGGCcgGCuGCaGGGCc -3'
miRNA:   3'- -CCGu---GGCGGCGuG-CCCG--CG-CGaCUCG- -5'
10866 5' -63.1 NC_002794.1 + 105505 0.66 0.665093
Target:  5'- -cCGCCGCCGC-CGGuCGCGCcGuccgaAGCg -3'
miRNA:   3'- ccGUGGCGGCGuGCCcGCGCGaC-----UCG- -5'
10866 5' -63.1 NC_002794.1 + 70003 0.66 0.665093
Target:  5'- cGCGCCGaCCGacaGCaGGUGCGCgaucAGCc -3'
miRNA:   3'- cCGUGGC-GGCg--UGcCCGCGCGac--UCG- -5'
10866 5' -63.1 NC_002794.1 + 120891 0.66 0.665093
Target:  5'- cGGCGagGUCacCGCGGGgGUGCUGAcGCg -3'
miRNA:   3'- -CCGUggCGGc-GUGCCCgCGCGACU-CG- -5'
10866 5' -63.1 NC_002794.1 + 96184 0.66 0.66414
Target:  5'- uGCACCGgCGCcuGCcGGCcgagucccugccgGCGCUGGGUc -3'
miRNA:   3'- cCGUGGCgGCG--UGcCCG-------------CGCGACUCG- -5'
10866 5' -63.1 NC_002794.1 + 52904 0.66 0.659372
Target:  5'- cGGCGCCGCCGCcguCGccgccgccgucgcucGGCcggcaCGC-GAGCa -3'
miRNA:   3'- -CCGUGGCGGCGu--GC---------------CCGc----GCGaCUCG- -5'
10866 5' -63.1 NC_002794.1 + 84904 0.66 0.655555
Target:  5'- -uCGCUGCC-CAUGGGUucggaacccgGCGCgGAGCg -3'
miRNA:   3'- ccGUGGCGGcGUGCCCG----------CGCGaCUCG- -5'
10866 5' -63.1 NC_002794.1 + 90385 0.66 0.655555
Target:  5'- gGGUcucGCCGuCCGCGauCGGGC-UGCacgUGAGCa -3'
miRNA:   3'- -CCG---UGGC-GGCGU--GCCCGcGCG---ACUCG- -5'
10866 5' -63.1 NC_002794.1 + 106366 0.66 0.655555
Target:  5'- gGGCGCCGguUCGCGCGGaGgGCagacgGC-GGGCg -3'
miRNA:   3'- -CCGUGGC--GGCGUGCC-CgCG-----CGaCUCG- -5'
10866 5' -63.1 NC_002794.1 + 112623 0.66 0.655555
Target:  5'- cGCGUCGUC-CACGGGCG-GCUucucGAGCa -3'
miRNA:   3'- cCGUGGCGGcGUGCCCGCgCGA----CUCG- -5'
10866 5' -63.1 NC_002794.1 + 137663 0.66 0.655555
Target:  5'- cGGCGCCGCUgGUGCGGaCGCacgguccaGUUGAGg -3'
miRNA:   3'- -CCGUGGCGG-CGUGCCcGCG--------CGACUCg -5'
10866 5' -63.1 NC_002794.1 + 113121 0.66 0.65269
Target:  5'- uGGCGCUucuCCGUguccgagaggaaggGCGGGCGCGUcagcgUGuAGCg -3'
miRNA:   3'- -CCGUGGc--GGCG--------------UGCCCGCGCG-----AC-UCG- -5'
10866 5' -63.1 NC_002794.1 + 76765 0.66 0.65269
Target:  5'- uGGCAaugCGCCucguagaaguccgaGC-CGGGCGgGC-GAGCg -3'
miRNA:   3'- -CCGUg--GCGG--------------CGuGCCCGCgCGaCUCG- -5'
10866 5' -63.1 NC_002794.1 + 16357 0.66 0.646
Target:  5'- cGGCGCCacCCGCACccGCGUGCacGGCg -3'
miRNA:   3'- -CCGUGGc-GGCGUGccCGCGCGacUCG- -5'
10866 5' -63.1 NC_002794.1 + 142560 0.66 0.646
Target:  5'- cGCGCC-CCGgAUGGGauagagcaGCGCgaUGGGCg -3'
miRNA:   3'- cCGUGGcGGCgUGCCCg-------CGCG--ACUCG- -5'
10866 5' -63.1 NC_002794.1 + 59214 0.66 0.646
Target:  5'- cGGCGucuCgGCCGC---GGCGCGC-GAGCu -3'
miRNA:   3'- -CCGU---GgCGGCGugcCCGCGCGaCUCG- -5'
10866 5' -63.1 NC_002794.1 + 195296 0.66 0.646
Target:  5'- cGCACCGCUGCACGcaccgccGCGuCGCcuucgccGAGUa -3'
miRNA:   3'- cCGUGGCGGCGUGCc------CGC-GCGa------CUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.