miRNA display CGI


Results 41 - 60 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10866 5' -63.1 NC_002794.1 + 195296 0.66 0.646
Target:  5'- cGCACCGCUGCACGcaccgccGCGuCGCcuucgccGAGUa -3'
miRNA:   3'- cCGUGGCGGCGUGCc------CGC-GCGa------CUCG- -5'
10866 5' -63.1 NC_002794.1 + 59214 0.66 0.646
Target:  5'- cGGCGucuCgGCCGC---GGCGCGC-GAGCu -3'
miRNA:   3'- -CCGU---GgCGGCGugcCCGCGCGaCUCG- -5'
10866 5' -63.1 NC_002794.1 + 142560 0.66 0.646
Target:  5'- cGCGCC-CCGgAUGGGauagagcaGCGCgaUGGGCg -3'
miRNA:   3'- cCGUGGcGGCgUGCCCg-------CGCG--ACUCG- -5'
10866 5' -63.1 NC_002794.1 + 123939 0.66 0.646
Target:  5'- gGGCACCG-CGUACcgucugagccGCGCGCagGAGCc -3'
miRNA:   3'- -CCGUGGCgGCGUGcc--------CGCGCGa-CUCG- -5'
10866 5' -63.1 NC_002794.1 + 62681 0.66 0.646
Target:  5'- --aACCGCC-UGCGGGUGCaGCUGugucGGCg -3'
miRNA:   3'- ccgUGGCGGcGUGCCCGCG-CGAC----UCG- -5'
10866 5' -63.1 NC_002794.1 + 40614 0.66 0.645044
Target:  5'- cGGCGuCCGacuCCGCggaguccGCGaGCGCgaGCUGAGCg -3'
miRNA:   3'- -CCGU-GGC---GGCG-------UGCcCGCG--CGACUCG- -5'
10866 5' -63.1 NC_002794.1 + 58767 0.66 0.645044
Target:  5'- aGGaGCCGCUGCugGccuacgucaGCGCGCUGcacgaccGGCg -3'
miRNA:   3'- -CCgUGGCGGCGugCc--------CGCGCGAC-------UCG- -5'
10866 5' -63.1 NC_002794.1 + 188798 0.66 0.645044
Target:  5'- cGGCcCCGCCGaGCGccguccaGGCGCaCuUGAGCu -3'
miRNA:   3'- -CCGuGGCGGCgUGC-------CCGCGcG-ACUCG- -5'
10866 5' -63.1 NC_002794.1 + 107316 0.66 0.643132
Target:  5'- gGGCGCCGuCCGCGCGGuucggcuucgguccGUGgguccggucgcCGC-GAGCg -3'
miRNA:   3'- -CCGUGGC-GGCGUGCC--------------CGC-----------GCGaCUCG- -5'
10866 5' -63.1 NC_002794.1 + 63977 0.67 0.636436
Target:  5'- -uCACCGCCGUgacccgcaaaGCGGGCucCGuCUGGGUc -3'
miRNA:   3'- ccGUGGCGGCG----------UGCCCGc-GC-GACUCG- -5'
10866 5' -63.1 NC_002794.1 + 148133 0.67 0.636436
Target:  5'- gGGCGCgggGCCGC-CGGG-GCGa-GGGCg -3'
miRNA:   3'- -CCGUGg--CGGCGuGCCCgCGCgaCUCG- -5'
10866 5' -63.1 NC_002794.1 + 92305 0.67 0.636436
Target:  5'- aGGCGggGCUggGCGCGGGCG-GCggGGGCc -3'
miRNA:   3'- -CCGUggCGG--CGUGCCCGCgCGa-CUCG- -5'
10866 5' -63.1 NC_002794.1 + 52629 0.67 0.636436
Target:  5'- -cCGCCGCCGCgucgaACGGGa--GCcgGAGCg -3'
miRNA:   3'- ccGUGGCGGCG-----UGCCCgcgCGa-CUCG- -5'
10866 5' -63.1 NC_002794.1 + 180292 0.67 0.636436
Target:  5'- cGCGCCGCCGCaacacgccgGCcGGCGCGaccagacgaUGaAGCc -3'
miRNA:   3'- cCGUGGCGGCG---------UGcCCGCGCg--------AC-UCG- -5'
10866 5' -63.1 NC_002794.1 + 195537 0.67 0.636436
Target:  5'- cGGCGgaCGCCGCACccaCGCcCUGAGCc -3'
miRNA:   3'- -CCGUg-GCGGCGUGcccGCGcGACUCG- -5'
10866 5' -63.1 NC_002794.1 + 122217 0.67 0.636436
Target:  5'- cGGCGCCGCUacgauaagcgGCGCcGGaCGCuGCUgucGAGCc -3'
miRNA:   3'- -CCGUGGCGG----------CGUGcCC-GCG-CGA---CUCG- -5'
10866 5' -63.1 NC_002794.1 + 141648 0.67 0.636436
Target:  5'- cGGCgugGCCGCgGcCGCcGGCGgGUcGAGCg -3'
miRNA:   3'- -CCG---UGGCGgC-GUGcCCGCgCGaCUCG- -5'
10866 5' -63.1 NC_002794.1 + 187798 0.67 0.633566
Target:  5'- cGGC-CCGCgaaGCgagcgagcgagugaGCGGaGCGCGCUcGGCu -3'
miRNA:   3'- -CCGuGGCGg--CG--------------UGCC-CGCGCGAcUCG- -5'
10866 5' -63.1 NC_002794.1 + 156406 0.67 0.633566
Target:  5'- cGGCGCCGCgGCcgcggccacggccgGCGGGUgagagaccggucGCGCcGAagGCg -3'
miRNA:   3'- -CCGUGGCGgCG--------------UGCCCG------------CGCGaCU--CG- -5'
10866 5' -63.1 NC_002794.1 + 12589 0.67 0.633566
Target:  5'- cGGCGCCugcguccccacGCUGCGCcaccagcgcgucugGGGC-CGCUucGAGCa -3'
miRNA:   3'- -CCGUGG-----------CGGCGUG--------------CCCGcGCGA--CUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.