miRNA display CGI


Results 1 - 20 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10866 5' -63.1 NC_002794.1 + 142 0.75 0.210086
Target:  5'- cGGgACCGCCGCAgGGGCGCacc-AGCa -3'
miRNA:   3'- -CCgUGGCGGCGUgCCCGCGcgacUCG- -5'
10866 5' -63.1 NC_002794.1 + 255 0.67 0.588698
Target:  5'- cGG-ACUGCCGC-CGcGCGCGCgGAcGCg -3'
miRNA:   3'- -CCgUGGCGGCGuGCcCGCGCGaCU-CG- -5'
10866 5' -63.1 NC_002794.1 + 751 0.66 0.674608
Target:  5'- gGGCuCUGCCGUuuugcCGGGCcCGCgGuGCa -3'
miRNA:   3'- -CCGuGGCGGCGu----GCCCGcGCGaCuCG- -5'
10866 5' -63.1 NC_002794.1 + 2609 0.7 0.413535
Target:  5'- uGGCACCuacccgGCCGC-CGGcGCGCGUccccagcaaaugagGAGCu -3'
miRNA:   3'- -CCGUGG------CGGCGuGCC-CGCGCGa-------------CUCG- -5'
10866 5' -63.1 NC_002794.1 + 8318 0.7 0.417617
Target:  5'- cGGCACCGCCGCGCcc-CGCGCcaaacgccccaagUGcAGCc -3'
miRNA:   3'- -CCGUGGCGGCGUGcccGCGCG-------------AC-UCG- -5'
10866 5' -63.1 NC_002794.1 + 12020 0.67 0.604889
Target:  5'- uGCGCCGCCgGCcCGGGCGUccgcgccuuccccuGCcgguaucucUGGGCc -3'
miRNA:   3'- cCGUGGCGG-CGuGCCCGCG--------------CG---------ACUCG- -5'
10866 5' -63.1 NC_002794.1 + 12186 0.72 0.348788
Target:  5'- -aCGCCGCCGCGgcCGGGCGcCGCUcGGa -3'
miRNA:   3'- ccGUGGCGGCGU--GCCCGC-GCGAcUCg -5'
10866 5' -63.1 NC_002794.1 + 12399 0.67 0.57921
Target:  5'- uGGCcgacaACCGCaCGCggACGGcGCGCGCcGAcugGCa -3'
miRNA:   3'- -CCG-----UGGCG-GCG--UGCC-CGCGCGaCU---CG- -5'
10866 5' -63.1 NC_002794.1 + 12589 0.67 0.633566
Target:  5'- cGGCGCCugcguccccacGCUGCGCcaccagcgcgucugGGGC-CGCUucGAGCa -3'
miRNA:   3'- -CCGUGG-----------CGGCGUG--------------CCCGcGCGA--CUCG- -5'
10866 5' -63.1 NC_002794.1 + 13117 0.69 0.486957
Target:  5'- cGGCGgggUCGCCGCGCGGcucgcuCGCGC-GGGUc -3'
miRNA:   3'- -CCGU---GGCGGCGUGCCc-----GCGCGaCUCG- -5'
10866 5' -63.1 NC_002794.1 + 13279 0.66 0.690709
Target:  5'- cGGCcgcuguugACgGCgGCAUGGGCGCuucccccccgcccgGC-GAGCg -3'
miRNA:   3'- -CCG--------UGgCGgCGUGCCCGCG--------------CGaCUCG- -5'
10866 5' -63.1 NC_002794.1 + 14570 0.68 0.569755
Target:  5'- aGGCgaGCCgGCCGaccgaaGCGGGCcguggcgagcGCGCcGGGCa -3'
miRNA:   3'- -CCG--UGG-CGGCg-----UGCCCG----------CGCGaCUCG- -5'
10866 5' -63.1 NC_002794.1 + 14655 0.67 0.583001
Target:  5'- cGGCGCCGCggcgucgguccgacuCGCggcgGCGGuCGCGCUGcuccugacGGCg -3'
miRNA:   3'- -CCGUGGCG---------------GCG----UGCCcGCGCGAC--------UCG- -5'
10866 5' -63.1 NC_002794.1 + 15272 0.71 0.394289
Target:  5'- cGGCGa-GCCGCGCGGcucccucCGCGC-GAGCg -3'
miRNA:   3'- -CCGUggCGGCGUGCCc------GCGCGaCUCG- -5'
10866 5' -63.1 NC_002794.1 + 16357 0.66 0.646
Target:  5'- cGGCGCCacCCGCACccGCGUGCacGGCg -3'
miRNA:   3'- -CCGUGGc-GGCGUGccCGCGCGacUCG- -5'
10866 5' -63.1 NC_002794.1 + 17436 0.69 0.504915
Target:  5'- cGCGCCGCCgGCGCucGGGCcCGCgaccGAGg -3'
miRNA:   3'- cCGUGGCGG-CGUG--CCCGcGCGa---CUCg -5'
10866 5' -63.1 NC_002794.1 + 18800 0.67 0.592502
Target:  5'- cGGCcCCGCCGgccaACGGGUcggcgaccucggccgGCGCgGAGg -3'
miRNA:   3'- -CCGuGGCGGCg---UGCCCG---------------CGCGaCUCg -5'
10866 5' -63.1 NC_002794.1 + 19969 0.67 0.57637
Target:  5'- aGCugCgGCCGCccuuCGGGCuguccguccuggugGCGCUGcGCa -3'
miRNA:   3'- cCGugG-CGGCGu---GCCCG--------------CGCGACuCG- -5'
10866 5' -63.1 NC_002794.1 + 21694 0.66 0.665093
Target:  5'- cGGCuccCCGCCucggcgucCACGGGCGCuGCgucGCg -3'
miRNA:   3'- -CCGu--GGCGGc-------GUGCCCGCG-CGacuCG- -5'
10866 5' -63.1 NC_002794.1 + 32296 0.68 0.550964
Target:  5'- cGcCGCCGCCGCgGCGGcCGCGCcGGccGCg -3'
miRNA:   3'- cC-GUGGCGGCG-UGCCcGCGCGaCU--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.