miRNA display CGI


Results 21 - 40 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10866 5' -63.1 NC_002794.1 + 32514 0.67 0.588698
Target:  5'- cGGCucCCGCCGUGCcGGUGa--UGAGCa -3'
miRNA:   3'- -CCGu-GGCGGCGUGcCCGCgcgACUCG- -5'
10866 5' -63.1 NC_002794.1 + 32560 0.68 0.531444
Target:  5'- cGGCAgCCGCggauaguCGCGCGcGGCGgUGCcgGGGCc -3'
miRNA:   3'- -CCGU-GGCG-------GCGUGC-CCGC-GCGa-CUCG- -5'
10866 5' -63.1 NC_002794.1 + 33457 0.69 0.514001
Target:  5'- gGGCgGCCGCCGgACGcGCccacgccgcuGCaGCUGGGCa -3'
miRNA:   3'- -CCG-UGGCGGCgUGCcCG----------CG-CGACUCG- -5'
10866 5' -63.1 NC_002794.1 + 33640 1.13 0.000496
Target:  5'- cGGCACCGCCGCACGGGCGCGCUGAGCg -3'
miRNA:   3'- -CCGUGGCGGCGUGCCCGCGCGACUCG- -5'
10866 5' -63.1 NC_002794.1 + 34251 0.74 0.275453
Target:  5'- cGGCuGCCGCCGCagGCGGaccGCGCGCa-GGCg -3'
miRNA:   3'- -CCG-UGGCGGCG--UGCC---CGCGCGacUCG- -5'
10866 5' -63.1 NC_002794.1 + 34486 0.66 0.685039
Target:  5'- aGCugCGCCGCcaggugaccaaccaGGGCGCGgaGGa- -3'
miRNA:   3'- cCGugGCGGCGug------------CCCGCGCgaCUcg -5'
10866 5' -63.1 NC_002794.1 + 34711 0.76 0.200588
Target:  5'- aGGC-CCGCCggcgccacgagGCGCGGGCGgcCGCaGAGCg -3'
miRNA:   3'- -CCGuGGCGG-----------CGUGCCCGC--GCGaCUCG- -5'
10866 5' -63.1 NC_002794.1 + 34838 0.72 0.320599
Target:  5'- cGGCGCCGgaGCgggcgucggaGCGGGCGCcGC-GGGCg -3'
miRNA:   3'- -CCGUGGCggCG----------UGCCCGCG-CGaCUCG- -5'
10866 5' -63.1 NC_002794.1 + 35066 0.72 0.341578
Target:  5'- -cCGCCGCUGCGUGGGCGCcCUGGuGCc -3'
miRNA:   3'- ccGUGGCGGCGUGCCCGCGcGACU-CG- -5'
10866 5' -63.1 NC_002794.1 + 35553 0.73 0.29995
Target:  5'- cGGCGCuCGCgCGCGCGcgugguggcccaGGCGUucuuccgcaccgaGCUGAGCg -3'
miRNA:   3'- -CCGUG-GCG-GCGUGC------------CCGCG-------------CGACUCG- -5'
10866 5' -63.1 NC_002794.1 + 35773 0.66 0.665093
Target:  5'- cGGCACCGUCGCcgGCGucgucuccGGCGUGaccCUGcGCc -3'
miRNA:   3'- -CCGUGGCGGCG--UGC--------CCGCGC---GACuCG- -5'
10866 5' -63.1 NC_002794.1 + 36322 0.66 0.665093
Target:  5'- -aCGCCGUCGaACGGcGCGCaGUcGAGCa -3'
miRNA:   3'- ccGUGGCGGCgUGCC-CGCG-CGaCUCG- -5'
10866 5' -63.1 NC_002794.1 + 36358 0.66 0.684092
Target:  5'- uGCGCgGCCaC-CGGGUGCGCgcccgcGGCg -3'
miRNA:   3'- cCGUGgCGGcGuGCCCGCGCGac----UCG- -5'
10866 5' -63.1 NC_002794.1 + 36576 0.71 0.402237
Target:  5'- cGCGCCGCCGagcagGCGGuccGCGUGCcacacGAGCg -3'
miRNA:   3'- cCGUGGCGGCg----UGCC---CGCGCGa----CUCG- -5'
10866 5' -63.1 NC_002794.1 + 37072 0.68 0.523154
Target:  5'- cGUACuCGgCGaaGCGGGCGCcGUUGAGCc -3'
miRNA:   3'- cCGUG-GCgGCg-UGCCCGCG-CGACUCG- -5'
10866 5' -63.1 NC_002794.1 + 37261 0.74 0.24642
Target:  5'- cGCucuCCGUCG-GCGGGCGCGC-GGGCg -3'
miRNA:   3'- cCGu--GGCGGCgUGCCCGCGCGaCUCG- -5'
10866 5' -63.1 NC_002794.1 + 37490 0.67 0.588698
Target:  5'- cGGCGCgaccaGCCGCACGcGCGUGUggucGCg -3'
miRNA:   3'- -CCGUGg----CGGCGUGCcCGCGCGacu-CG- -5'
10866 5' -63.1 NC_002794.1 + 37739 0.75 0.209602
Target:  5'- cGGCGCCGCCggcggcgGCGCGgcGGCGCcgGCggGAGCg -3'
miRNA:   3'- -CCGUGGCGG-------CGUGC--CCGCG--CGa-CUCG- -5'
10866 5' -63.1 NC_002794.1 + 38118 0.68 0.550964
Target:  5'- gGGagaGCCGCgccaGCugGGGCGUGgaGucgAGCa -3'
miRNA:   3'- -CCg--UGGCGg---CGugCCCGCGCgaC---UCG- -5'
10866 5' -63.1 NC_002794.1 + 38460 0.73 0.281577
Target:  5'- cGGCGCgGCCGC---GGCGCGCccuuuaUGGGCg -3'
miRNA:   3'- -CCGUGgCGGCGugcCCGCGCG------ACUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.