miRNA display CGI


Results 1 - 20 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10866 5' -63.1 NC_002794.1 + 195537 0.67 0.636436
Target:  5'- cGGCGgaCGCCGCACccaCGCcCUGAGCc -3'
miRNA:   3'- -CCGUg-GCGGCGUGcccGCGcGACUCG- -5'
10866 5' -63.1 NC_002794.1 + 195296 0.66 0.646
Target:  5'- cGCACCGCUGCACGcaccgccGCGuCGCcuucgccGAGUa -3'
miRNA:   3'- cCGUGGCGGCGUGCc------CGC-GCGa------CUCG- -5'
10866 5' -63.1 NC_002794.1 + 195111 0.68 0.560337
Target:  5'- cGGCGucucgugCGCC-CGCGGcGCGCGC-GGGCu -3'
miRNA:   3'- -CCGUg------GCGGcGUGCC-CGCGCGaCUCG- -5'
10866 5' -63.1 NC_002794.1 + 194986 0.68 0.569755
Target:  5'- aGGCACagCGCCGCGCGcaCGCccuGCcGGGCg -3'
miRNA:   3'- -CCGUG--GCGGCGUGCccGCG---CGaCUCG- -5'
10866 5' -63.1 NC_002794.1 + 194870 0.66 0.684092
Target:  5'- cGCGCCGCgcgaUGCACaGGuCGCGC--AGCu -3'
miRNA:   3'- cCGUGGCG----GCGUGcCC-GCGCGacUCG- -5'
10866 5' -63.1 NC_002794.1 + 194540 0.68 0.560337
Target:  5'- aGCGCCGCCaGCACGccCGCGCgGAa- -3'
miRNA:   3'- cCGUGGCGG-CGUGCccGCGCGaCUcg -5'
10866 5' -63.1 NC_002794.1 + 194315 0.69 0.486957
Target:  5'- aGCGCCuGCCGCAgCGGauCGCGCcacGGGCu -3'
miRNA:   3'- cCGUGG-CGGCGU-GCCc-GCGCGa--CUCG- -5'
10866 5' -63.1 NC_002794.1 + 194271 0.68 0.541639
Target:  5'- -aCGCCGCCucGCACGGcGCGCGCc---- -3'
miRNA:   3'- ccGUGGCGG--CGUGCC-CGCGCGacucg -5'
10866 5' -63.1 NC_002794.1 + 194117 0.71 0.361292
Target:  5'- cGGCACCGCgCGCACGGcugaggcagcggccGCagcaGCGCccgcGAGCc -3'
miRNA:   3'- -CCGUGGCG-GCGUGCC--------------CG----CGCGa---CUCG- -5'
10866 5' -63.1 NC_002794.1 + 193516 0.71 0.363531
Target:  5'- -cCACCGCCGCGCGcaccuuccGCGCGUugucuUGGGCu -3'
miRNA:   3'- ccGUGGCGGCGUGCc-------CGCGCG-----ACUCG- -5'
10866 5' -63.1 NC_002794.1 + 192651 0.76 0.20529
Target:  5'- cGCGCCGCCGCGCGcucGCGCGaCUcGaAGCg -3'
miRNA:   3'- cCGUGGCGGCGUGCc--CGCGC-GA-C-UCG- -5'
10866 5' -63.1 NC_002794.1 + 192358 0.7 0.44942
Target:  5'- cGGCcuccGCCGCCGCcgaccgagcGCGGGCugaccgccaccgccGCGCcgGGGUa -3'
miRNA:   3'- -CCG----UGGCGGCG---------UGCCCG--------------CGCGa-CUCG- -5'
10866 5' -63.1 NC_002794.1 + 192238 0.69 0.495899
Target:  5'- cGGCGCUGCCGuCGCcgacGGCGCGgUucGCu -3'
miRNA:   3'- -CCGUGGCGGC-GUGc---CCGCGCgAcuCG- -5'
10866 5' -63.1 NC_002794.1 + 192142 0.66 0.646
Target:  5'- uGCuGCUGCCgGCGCGGuCGCGgCgGAGCc -3'
miRNA:   3'- cCG-UGGCGG-CGUGCCcGCGC-GaCUCG- -5'
10866 5' -63.1 NC_002794.1 + 189908 0.67 0.607752
Target:  5'- aGCGCCGCCGCGCGaccGCcCGCUc-GCc -3'
miRNA:   3'- cCGUGGCGGCGUGCc--CGcGCGAcuCG- -5'
10866 5' -63.1 NC_002794.1 + 189463 0.75 0.21997
Target:  5'- aGCACgCGCCGaaaggcCGCGGGCGUcgugugcacccaGCUGGGCa -3'
miRNA:   3'- cCGUG-GCGGC------GUGCCCGCG------------CGACUCG- -5'
10866 5' -63.1 NC_002794.1 + 189023 0.67 0.587748
Target:  5'- aGGCcaggagccgcucgACCGCCaGCgGCGGGCuGCGCgucGCg -3'
miRNA:   3'- -CCG-------------UGGCGG-CG-UGCCCG-CGCGacuCG- -5'
10866 5' -63.1 NC_002794.1 + 188939 0.72 0.356106
Target:  5'- aGGC-CCGCUGUcCGGGCGUGCgcaGGUu -3'
miRNA:   3'- -CCGuGGCGGCGuGCCCGCGCGac-UCG- -5'
10866 5' -63.1 NC_002794.1 + 188798 0.66 0.645044
Target:  5'- cGGCcCCGCCGaGCGccguccaGGCGCaCuUGAGCu -3'
miRNA:   3'- -CCGuGGCGGCgUGC-------CCGCGcG-ACUCG- -5'
10866 5' -63.1 NC_002794.1 + 188346 0.68 0.550964
Target:  5'- cGGCGCCGUCGCGCccguccggccgGcGGCG-GCcgaGGGCg -3'
miRNA:   3'- -CCGUGGCGGCGUG-----------C-CCGCgCGa--CUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.