Results 1 - 20 of 305 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10866 | 5' | -63.1 | NC_002794.1 | + | 58365 | 0.83 | 0.067784 |
Target: 5'- uGGCGCCGCCcgacuuccaggaggcGCGCGGGCGCcagcuGCUGgAGCa -3' miRNA: 3'- -CCGUGGCGG---------------CGUGCCCGCG-----CGAC-UCG- -5' |
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10866 | 5' | -63.1 | NC_002794.1 | + | 104490 | 0.66 | 0.684092 |
Target: 5'- cGGCcacgGCgGCCGgGuCGGGCGagaacggGCUGAGg -3' miRNA: 3'- -CCG----UGgCGGCgU-GCCCGCg------CGACUCg -5' |
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10866 | 5' | -63.1 | NC_002794.1 | + | 36358 | 0.66 | 0.684092 |
Target: 5'- uGCGCgGCCaC-CGGGUGCGCgcccgcGGCg -3' miRNA: 3'- cCGUGgCGGcGuGCCCGCGCGac----UCG- -5' |
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10866 | 5' | -63.1 | NC_002794.1 | + | 128320 | 0.66 | 0.684092 |
Target: 5'- uGGCgACCGagcCCGCcCGGaCGCGguggaCUGAGCa -3' miRNA: 3'- -CCG-UGGC---GGCGuGCCcGCGC-----GACUCG- -5' |
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10866 | 5' | -63.1 | NC_002794.1 | + | 91124 | 0.66 | 0.684092 |
Target: 5'- uGGUGCCGUgcguggaggagGCGCGgacGGUGCuGCUGGGCg -3' miRNA: 3'- -CCGUGGCGg----------CGUGC---CCGCG-CGACUCG- -5' |
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10866 | 5' | -63.1 | NC_002794.1 | + | 80516 | 0.66 | 0.674608 |
Target: 5'- uGCGCCGCgGCGCGcGaCGC-CUG-GCa -3' miRNA: 3'- cCGUGGCGgCGUGC-CcGCGcGACuCG- -5' |
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10866 | 5' | -63.1 | NC_002794.1 | + | 142130 | 0.66 | 0.674608 |
Target: 5'- cGGCgGCCGaCCGC-CGGGUcacgGCGgaG-GCg -3' miRNA: 3'- -CCG-UGGC-GGCGuGCCCG----CGCgaCuCG- -5' |
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10866 | 5' | -63.1 | NC_002794.1 | + | 104891 | 0.66 | 0.674608 |
Target: 5'- gGGC-CgGCCGCGa-GGCGCcgugcuGCUcGAGCa -3' miRNA: 3'- -CCGuGgCGGCGUgcCCGCG------CGA-CUCG- -5' |
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10866 | 5' | -63.1 | NC_002794.1 | + | 120891 | 0.66 | 0.665093 |
Target: 5'- cGGCGagGUCacCGCGGGgGUGCUGAcGCg -3' miRNA: 3'- -CCGUggCGGc-GUGCCCgCGCGACU-CG- -5' |
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10866 | 5' | -63.1 | NC_002794.1 | + | 126704 | 0.66 | 0.684092 |
Target: 5'- gGGCGCCGCgGacuCGGG-GCGagggGGGUg -3' miRNA: 3'- -CCGUGGCGgCgu-GCCCgCGCga--CUCG- -5' |
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10866 | 5' | -63.1 | NC_002794.1 | + | 136942 | 0.66 | 0.684092 |
Target: 5'- cGGCGCCGagauaguccCCGCAgGGGaCG-GUgacGAGCu -3' miRNA: 3'- -CCGUGGC---------GGCGUgCCC-GCgCGa--CUCG- -5' |
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10866 | 5' | -63.1 | NC_002794.1 | + | 34486 | 0.66 | 0.685039 |
Target: 5'- aGCugCGCCGCcaggugaccaaccaGGGCGCGgaGGa- -3' miRNA: 3'- cCGugGCGGCGug------------CCCGCGCgaCUcg -5' |
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10866 | 5' | -63.1 | NC_002794.1 | + | 178403 | 0.66 | 0.693539 |
Target: 5'- uGCAUCGUcgcuaagcguguCGCACGGacCGCGCgacGGGCg -3' miRNA: 3'- cCGUGGCG------------GCGUGCCc-GCGCGa--CUCG- -5' |
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10866 | 5' | -63.1 | NC_002794.1 | + | 111164 | 0.66 | 0.693539 |
Target: 5'- aGGCAgaCGCgGUGCaGGGCGCGCa---- -3' miRNA: 3'- -CCGUg-GCGgCGUG-CCCGCGCGacucg -5' |
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10866 | 5' | -63.1 | NC_002794.1 | + | 143392 | 0.66 | 0.693539 |
Target: 5'- gGGUcaGCUGCUGCucgacCGGcGCGgGCcGGGCg -3' miRNA: 3'- -CCG--UGGCGGCGu----GCC-CGCgCGaCUCG- -5' |
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10866 | 5' | -63.1 | NC_002794.1 | + | 94962 | 0.66 | 0.693539 |
Target: 5'- uGGCGuCCuggaGCCGaCGCGGGgGCug-GAGCu -3' miRNA: 3'- -CCGU-GG----CGGC-GUGCCCgCGcgaCUCG- -5' |
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10866 | 5' | -63.1 | NC_002794.1 | + | 112837 | 0.66 | 0.693539 |
Target: 5'- aGUACgGCUGCuCGucGGCGCGCcGcAGCa -3' miRNA: 3'- cCGUGgCGGCGuGC--CCGCGCGaC-UCG- -5' |
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10866 | 5' | -63.1 | NC_002794.1 | + | 69501 | 0.66 | 0.693539 |
Target: 5'- cGCACCaCgCGCACGgucagguacGGCGCGUgcacgaGAGCc -3' miRNA: 3'- cCGUGGcG-GCGUGC---------CCGCGCGa-----CUCG- -5' |
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10866 | 5' | -63.1 | NC_002794.1 | + | 13279 | 0.66 | 0.690709 |
Target: 5'- cGGCcgcuguugACgGCgGCAUGGGCGCuucccccccgcccgGC-GAGCg -3' miRNA: 3'- -CCG--------UGgCGgCGUGCCCGCG--------------CGaCUCG- -5' |
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10866 | 5' | -63.1 | NC_002794.1 | + | 194870 | 0.66 | 0.684092 |
Target: 5'- cGCGCCGCgcgaUGCACaGGuCGCGC--AGCu -3' miRNA: 3'- cCGUGGCG----GCGUGcCC-GCGCGacUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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