miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10867 3' -54.7 NC_002794.1 + 88170 0.65 0.950692
Target:  5'- aCAGUccGGGCAGaa-GCAGAaaaggggGGCUGCg -3'
miRNA:   3'- -GUCGa-CCCGUUguaCGUCU-------UCGACGa -5'
10867 3' -54.7 NC_002794.1 + 102674 0.66 0.946807
Target:  5'- gAGCgUGGGCGACcgGguGucGUacgUGCUg -3'
miRNA:   3'- gUCG-ACCCGUUGuaCguCuuCG---ACGA- -5'
10867 3' -54.7 NC_002794.1 + 94047 0.66 0.946807
Target:  5'- gAGC--GGCGGCgGUGCGGggGCgGCg -3'
miRNA:   3'- gUCGacCCGUUG-UACGUCuuCGaCGa -5'
10867 3' -54.7 NC_002794.1 + 189498 0.66 0.946363
Target:  5'- cCAGCUGGGCAccucguguccgucGCGgaucaGCGGguGCcGCUc -3'
miRNA:   3'- -GUCGACCCGU-------------UGUa----CGUCuuCGaCGA- -5'
10867 3' -54.7 NC_002794.1 + 142210 0.66 0.942725
Target:  5'- gCGGCgGcGGCAGCGgcggugcggggagcgGCGGAGGCgGCg -3'
miRNA:   3'- -GUCGaC-CCGUUGUa--------------CGUCUUCGaCGa -5'
10867 3' -54.7 NC_002794.1 + 186847 0.66 0.94226
Target:  5'- aCAGCgcgcGGGCGcugcCGUGCAGcAGCaGCg -3'
miRNA:   3'- -GUCGa---CCCGUu---GUACGUCuUCGaCGa -5'
10867 3' -54.7 NC_002794.1 + 110425 0.66 0.932943
Target:  5'- aAGCcGGGCGGCugucgucgucggugGCGGAGGCcgGCg -3'
miRNA:   3'- gUCGaCCCGUUGua------------CGUCUUCGa-CGa -5'
10867 3' -54.7 NC_002794.1 + 188273 0.66 0.932428
Target:  5'- gGGCcGGGUAGCGgaUGCAGGGcGCcGCg -3'
miRNA:   3'- gUCGaCCCGUUGU--ACGUCUU-CGaCGa -5'
10867 3' -54.7 NC_002794.1 + 112460 0.66 0.932428
Target:  5'- gCAGCguccGGUAGCG-GCucuGGAGCUGCUc -3'
miRNA:   3'- -GUCGac--CCGUUGUaCGu--CUUCGACGA- -5'
10867 3' -54.7 NC_002794.1 + 138078 0.66 0.932428
Target:  5'- uCGGUUGaaGGCGA--UGCAGAAGCgGCg -3'
miRNA:   3'- -GUCGAC--CCGUUguACGUCUUCGaCGa -5'
10867 3' -54.7 NC_002794.1 + 71599 0.66 0.927141
Target:  5'- gCGGCUGGGCgAACA-GCAGccGCUu-- -3'
miRNA:   3'- -GUCGACCCG-UUGUaCGUCuuCGAcga -5'
10867 3' -54.7 NC_002794.1 + 37873 0.66 0.927141
Target:  5'- uCGGCgucucGGGCGGCGgggGCGGuGGCgGCg -3'
miRNA:   3'- -GUCGa----CCCGUUGUa--CGUCuUCGaCGa -5'
10867 3' -54.7 NC_002794.1 + 117398 0.67 0.921605
Target:  5'- aAGC-GGGCcuccaccgucgcGACccgcUGCAGGAGCUGCc -3'
miRNA:   3'- gUCGaCCCG------------UUGu---ACGUCUUCGACGa -5'
10867 3' -54.7 NC_002794.1 + 97249 0.67 0.921605
Target:  5'- -uGUUGGGCAACAguCGGGAGCacgugGCg -3'
miRNA:   3'- guCGACCCGUUGUacGUCUUCGa----CGa -5'
10867 3' -54.7 NC_002794.1 + 122556 0.67 0.921605
Target:  5'- uGGCUGGaCGagaACGcGCAGcGGCUGCUg -3'
miRNA:   3'- gUCGACCcGU---UGUaCGUCuUCGACGA- -5'
10867 3' -54.7 NC_002794.1 + 150604 0.67 0.909791
Target:  5'- aCGGCcGGGCGccgGCucUGCGGGAGCUcGUg -3'
miRNA:   3'- -GUCGaCCCGU---UGu-ACGUCUUCGA-CGa -5'
10867 3' -54.7 NC_002794.1 + 114563 0.67 0.909791
Target:  5'- uCGGCcaGGcGCAGCGUcaGCGGAGGgUGCUc -3'
miRNA:   3'- -GUCGa-CC-CGUUGUA--CGUCUUCgACGA- -5'
10867 3' -54.7 NC_002794.1 + 104461 0.67 0.903515
Target:  5'- gAGCccGGGCGGCguGUGCAGGAuGCggGCg -3'
miRNA:   3'- gUCGa-CCCGUUG--UACGUCUU-CGa-CGa -5'
10867 3' -54.7 NC_002794.1 + 142324 0.68 0.890237
Target:  5'- gCGGCgcaGGCGGCGgaggcgGCGGAGGCgGCg -3'
miRNA:   3'- -GUCGac-CCGUUGUa-----CGUCUUCGaCGa -5'
10867 3' -54.7 NC_002794.1 + 95892 0.68 0.889549
Target:  5'- gCGGCgaGGGCgcacgacGugGUGCGGGAGgUGCa -3'
miRNA:   3'- -GUCGa-CCCG-------UugUACGUCUUCgACGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.