Results 41 - 45 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10867 | 3' | -54.7 | NC_002794.1 | + | 138078 | 0.66 | 0.932428 |
Target: 5'- uCGGUUGaaGGCGA--UGCAGAAGCgGCg -3' miRNA: 3'- -GUCGAC--CCGUUguACGUCUUCGaCGa -5' |
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10867 | 3' | -54.7 | NC_002794.1 | + | 37873 | 0.66 | 0.927141 |
Target: 5'- uCGGCgucucGGGCGGCGgggGCGGuGGCgGCg -3' miRNA: 3'- -GUCGa----CCCGUUGUa--CGUCuUCGaCGa -5' |
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10867 | 3' | -54.7 | NC_002794.1 | + | 71599 | 0.66 | 0.927141 |
Target: 5'- gCGGCUGGGCgAACA-GCAGccGCUu-- -3' miRNA: 3'- -GUCGACCCG-UUGUaCGUCuuCGAcga -5' |
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10867 | 3' | -54.7 | NC_002794.1 | + | 102674 | 0.66 | 0.946807 |
Target: 5'- gAGCgUGGGCGACcgGguGucGUacgUGCUg -3' miRNA: 3'- gUCG-ACCCGUUGuaCguCuuCG---ACGA- -5' |
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10867 | 3' | -54.7 | NC_002794.1 | + | 88170 | 0.65 | 0.950692 |
Target: 5'- aCAGUccGGGCAGaa-GCAGAaaaggggGGCUGCg -3' miRNA: 3'- -GUCGa-CCCGUUguaCGUCU-------UCGACGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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