miRNA display CGI


Results 21 - 40 of 45 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10867 3' -54.7 NC_002794.1 + 120793 0.68 0.889549
Target:  5'- uCGGCgaGGGUGACGUuuuuggaGCGGcAGCUGCg -3'
miRNA:   3'- -GUCGa-CCCGUUGUA-------CGUCuUCGACGa -5'
10867 3' -54.7 NC_002794.1 + 91082 0.68 0.883243
Target:  5'- -uGgUGGGCuACggGCucaAGGAGCUGCUg -3'
miRNA:   3'- guCgACCCGuUGuaCG---UCUUCGACGA- -5'
10867 3' -54.7 NC_002794.1 + 113376 0.68 0.876018
Target:  5'- gGGUgcGGGCcgccguCGUGCAGgcGCUGCa -3'
miRNA:   3'- gUCGa-CCCGuu----GUACGUCuuCGACGa -5'
10867 3' -54.7 NC_002794.1 + 32870 0.68 0.868566
Target:  5'- cCGGC-GGGCGGCGgcgGCGGcGGCgGCa -3'
miRNA:   3'- -GUCGaCCCGUUGUa--CGUCuUCGaCGa -5'
10867 3' -54.7 NC_002794.1 + 143028 0.68 0.860893
Target:  5'- uCGGCcGGGuCGACGUGCAG-GGCcGCc -3'
miRNA:   3'- -GUCGaCCC-GUUGUACGUCuUCGaCGa -5'
10867 3' -54.7 NC_002794.1 + 192023 0.68 0.860893
Target:  5'- gCGGCUGcuguuucuguGGCGGCG-GCGGcuGCUGCUg -3'
miRNA:   3'- -GUCGAC----------CCGUUGUaCGUCuuCGACGA- -5'
10867 3' -54.7 NC_002794.1 + 102644 0.69 0.844911
Target:  5'- cCGGCU-GGCGGCGcGCucggAGGAGCUGCc -3'
miRNA:   3'- -GUCGAcCCGUUGUaCG----UCUUCGACGa -5'
10867 3' -54.7 NC_002794.1 + 45289 0.69 0.836616
Target:  5'- gGGaCUGuacgaGGCGACGUGCAGAucGUUGCg -3'
miRNA:   3'- gUC-GAC-----CCGUUGUACGUCUu-CGACGa -5'
10867 3' -54.7 NC_002794.1 + 98929 0.69 0.836616
Target:  5'- gGGCUGGGCGcgGCcgGgaAGggGCUGg- -3'
miRNA:   3'- gUCGACCCGU--UGuaCg-UCuuCGACga -5'
10867 3' -54.7 NC_002794.1 + 91119 0.69 0.836616
Target:  5'- gCAGCUGGuGCcguGCGUGgAGGAggcgcggacgguGCUGCUg -3'
miRNA:   3'- -GUCGACC-CGu--UGUACgUCUU------------CGACGA- -5'
10867 3' -54.7 NC_002794.1 + 120505 0.69 0.836616
Target:  5'- gCAGCccgUGGGCAGCcUGCAGGcgguggcccccgGGCUGa- -3'
miRNA:   3'- -GUCG---ACCCGUUGuACGUCU------------UCGACga -5'
10867 3' -54.7 NC_002794.1 + 58745 0.69 0.828127
Target:  5'- gGGCUcaacGGGCAGCugGCGGAGgagccGCUGCUg -3'
miRNA:   3'- gUCGA----CCCGUUGuaCGUCUU-----CGACGA- -5'
10867 3' -54.7 NC_002794.1 + 194130 0.69 0.810602
Target:  5'- aCGGCUGaGGCAGCGgccGCAGcAGCgcccGCg -3'
miRNA:   3'- -GUCGAC-CCGUUGUa--CGUCuUCGa---CGa -5'
10867 3' -54.7 NC_002794.1 + 142360 0.7 0.801583
Target:  5'- gCGGCgGaGGCGGCGgagGCGGAGGgaGCg -3'
miRNA:   3'- -GUCGaC-CCGUUGUa--CGUCUUCgaCGa -5'
10867 3' -54.7 NC_002794.1 + 125682 0.7 0.783076
Target:  5'- uGGCUgacGGGCGACGUGUu---GCUGCg -3'
miRNA:   3'- gUCGA---CCCGUUGUACGucuuCGACGa -5'
10867 3' -54.7 NC_002794.1 + 94893 0.7 0.773607
Target:  5'- cCGGCUGacggucgacguGGCGACccugaacgagGUGgAGAGGCUGCUg -3'
miRNA:   3'- -GUCGAC-----------CCGUUG----------UACgUCUUCGACGA- -5'
10867 3' -54.7 NC_002794.1 + 190964 0.7 0.773607
Target:  5'- cCAGCgccucgGGGCAGCAgaGCAGGcAGCgcgGCg -3'
miRNA:   3'- -GUCGa-----CCCGUUGUa-CGUCU-UCGa--CGa -5'
10867 3' -54.7 NC_002794.1 + 112349 0.71 0.714373
Target:  5'- gCGGCgccGGCGGCGggGCgGGGAGCUGCUg -3'
miRNA:   3'- -GUCGac-CCGUUGUa-CG-UCUUCGACGA- -5'
10867 3' -54.7 NC_002794.1 + 92310 0.72 0.662916
Target:  5'- gGGCUGGGCGcggGCG-GCGGggGCccggGCg -3'
miRNA:   3'- gUCGACCCGU---UGUaCGUCuuCGa---CGa -5'
10867 3' -54.7 NC_002794.1 + 50590 0.73 0.609764
Target:  5'- gCGGCUGGGUGGCcgGCgccggggggaucgAGAcgAGCUGCUu -3'
miRNA:   3'- -GUCGACCCGUUGuaCG-------------UCU--UCGACGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.