miRNA display CGI


Results 1 - 20 of 45 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10867 3' -54.7 NC_002794.1 + 32870 0.68 0.868566
Target:  5'- cCGGC-GGGCGGCGgcgGCGGcGGCgGCa -3'
miRNA:   3'- -GUCGaCCCGUUGUa--CGUCuUCGaCGa -5'
10867 3' -54.7 NC_002794.1 + 33486 1.08 0.004185
Target:  5'- gCAGCUGGGCAACAUGCAGAAGCUGCUg -3'
miRNA:   3'- -GUCGACCCGUUGUACGUCUUCGACGA- -5'
10867 3' -54.7 NC_002794.1 + 34221 0.74 0.538732
Target:  5'- uGGgaGcGCAAgGUGCAGGAGCUGCa -3'
miRNA:   3'- gUCgaCcCGUUgUACGUCUUCGACGa -5'
10867 3' -54.7 NC_002794.1 + 37873 0.66 0.927141
Target:  5'- uCGGCgucucGGGCGGCGgggGCGGuGGCgGCg -3'
miRNA:   3'- -GUCGa----CCCGUUGUa--CGUCuUCGaCGa -5'
10867 3' -54.7 NC_002794.1 + 45289 0.69 0.836616
Target:  5'- gGGaCUGuacgaGGCGACGUGCAGAucGUUGCg -3'
miRNA:   3'- gUC-GAC-----CCGUUGUACGUCUu-CGACGa -5'
10867 3' -54.7 NC_002794.1 + 50590 0.73 0.609764
Target:  5'- gCGGCUGGGUGGCcgGCgccggggggaucgAGAcgAGCUGCUu -3'
miRNA:   3'- -GUCGACCCGUUGuaCG-------------UCU--UCGACGA- -5'
10867 3' -54.7 NC_002794.1 + 58648 0.78 0.363306
Target:  5'- gCAGCUGGGCGACggGCu---GCUGCa -3'
miRNA:   3'- -GUCGACCCGUUGuaCGucuuCGACGa -5'
10867 3' -54.7 NC_002794.1 + 58745 0.69 0.828127
Target:  5'- gGGCUcaacGGGCAGCugGCGGAGgagccGCUGCUg -3'
miRNA:   3'- gUCGA----CCCGUUGuaCGUCUU-----CGACGA- -5'
10867 3' -54.7 NC_002794.1 + 71599 0.66 0.927141
Target:  5'- gCGGCUGGGCgAACA-GCAGccGCUu-- -3'
miRNA:   3'- -GUCGACCCG-UUGUaCGUCuuCGAcga -5'
10867 3' -54.7 NC_002794.1 + 88170 0.65 0.950692
Target:  5'- aCAGUccGGGCAGaa-GCAGAaaaggggGGCUGCg -3'
miRNA:   3'- -GUCGa-CCCGUUguaCGUCU-------UCGACGa -5'
10867 3' -54.7 NC_002794.1 + 91082 0.68 0.883243
Target:  5'- -uGgUGGGCuACggGCucaAGGAGCUGCUg -3'
miRNA:   3'- guCgACCCGuUGuaCG---UCUUCGACGA- -5'
10867 3' -54.7 NC_002794.1 + 91119 0.69 0.836616
Target:  5'- gCAGCUGGuGCcguGCGUGgAGGAggcgcggacgguGCUGCUg -3'
miRNA:   3'- -GUCGACC-CGu--UGUACgUCUU------------CGACGA- -5'
10867 3' -54.7 NC_002794.1 + 91756 0.74 0.559096
Target:  5'- cCGGC-GGGCGGCAccgcGCAGGacgGGCUGCUg -3'
miRNA:   3'- -GUCGaCCCGUUGUa---CGUCU---UCGACGA- -5'
10867 3' -54.7 NC_002794.1 + 92310 0.72 0.662916
Target:  5'- gGGCUGGGCGcggGCG-GCGGggGCccggGCg -3'
miRNA:   3'- gUCGACCCGU---UGUaCGUCuuCGa---CGa -5'
10867 3' -54.7 NC_002794.1 + 94047 0.66 0.946807
Target:  5'- gAGC--GGCGGCgGUGCGGggGCgGCg -3'
miRNA:   3'- gUCGacCCGUUG-UACGUCuuCGaCGa -5'
10867 3' -54.7 NC_002794.1 + 94893 0.7 0.773607
Target:  5'- cCGGCUGacggucgacguGGCGACccugaacgagGUGgAGAGGCUGCUg -3'
miRNA:   3'- -GUCGAC-----------CCGUUG----------UACgUCUUCGACGA- -5'
10867 3' -54.7 NC_002794.1 + 95892 0.68 0.889549
Target:  5'- gCGGCgaGGGCgcacgacGugGUGCGGGAGgUGCa -3'
miRNA:   3'- -GUCGa-CCCG-------UugUACGUCUUCgACGa -5'
10867 3' -54.7 NC_002794.1 + 97249 0.67 0.921605
Target:  5'- -uGUUGGGCAACAguCGGGAGCacgugGCg -3'
miRNA:   3'- guCGACCCGUUGUacGUCUUCGa----CGa -5'
10867 3' -54.7 NC_002794.1 + 98929 0.69 0.836616
Target:  5'- gGGCUGGGCGcgGCcgGgaAGggGCUGg- -3'
miRNA:   3'- gUCGACCCGU--UGuaCg-UCuuCGACga -5'
10867 3' -54.7 NC_002794.1 + 102644 0.69 0.844911
Target:  5'- cCGGCU-GGCGGCGcGCucggAGGAGCUGCc -3'
miRNA:   3'- -GUCGAcCCGUUGUaCG----UCUUCGACGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.