miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10867 3' -54.7 NC_002794.1 + 194130 0.69 0.810602
Target:  5'- aCGGCUGaGGCAGCGgccGCAGcAGCgcccGCg -3'
miRNA:   3'- -GUCGAC-CCGUUGUa--CGUCuUCGa---CGa -5'
10867 3' -54.7 NC_002794.1 + 192023 0.68 0.860893
Target:  5'- gCGGCUGcuguuucuguGGCGGCG-GCGGcuGCUGCUg -3'
miRNA:   3'- -GUCGAC----------CCGUUGUaCGUCuuCGACGA- -5'
10867 3' -54.7 NC_002794.1 + 190964 0.7 0.773607
Target:  5'- cCAGCgccucgGGGCAGCAgaGCAGGcAGCgcgGCg -3'
miRNA:   3'- -GUCGa-----CCCGUUGUa-CGUCU-UCGa--CGa -5'
10867 3' -54.7 NC_002794.1 + 189498 0.66 0.946363
Target:  5'- cCAGCUGGGCAccucguguccgucGCGgaucaGCGGguGCcGCUc -3'
miRNA:   3'- -GUCGACCCGU-------------UGUa----CGUCuuCGaCGA- -5'
10867 3' -54.7 NC_002794.1 + 188273 0.66 0.932428
Target:  5'- gGGCcGGGUAGCGgaUGCAGGGcGCcGCg -3'
miRNA:   3'- gUCGaCCCGUUGU--ACGUCUU-CGaCGa -5'
10867 3' -54.7 NC_002794.1 + 186847 0.66 0.94226
Target:  5'- aCAGCgcgcGGGCGcugcCGUGCAGcAGCaGCg -3'
miRNA:   3'- -GUCGa---CCCGUu---GUACGUCuUCGaCGa -5'
10867 3' -54.7 NC_002794.1 + 150604 0.67 0.909791
Target:  5'- aCGGCcGGGCGccgGCucUGCGGGAGCUcGUg -3'
miRNA:   3'- -GUCGaCCCGU---UGu-ACGUCUUCGA-CGa -5'
10867 3' -54.7 NC_002794.1 + 143028 0.68 0.860893
Target:  5'- uCGGCcGGGuCGACGUGCAG-GGCcGCc -3'
miRNA:   3'- -GUCGaCCC-GUUGUACGUCuUCGaCGa -5'
10867 3' -54.7 NC_002794.1 + 142360 0.7 0.801583
Target:  5'- gCGGCgGaGGCGGCGgagGCGGAGGgaGCg -3'
miRNA:   3'- -GUCGaC-CCGUUGUa--CGUCUUCgaCGa -5'
10867 3' -54.7 NC_002794.1 + 142324 0.68 0.890237
Target:  5'- gCGGCgcaGGCGGCGgaggcgGCGGAGGCgGCg -3'
miRNA:   3'- -GUCGac-CCGUUGUa-----CGUCUUCGaCGa -5'
10867 3' -54.7 NC_002794.1 + 142210 0.66 0.942725
Target:  5'- gCGGCgGcGGCAGCGgcggugcggggagcgGCGGAGGCgGCg -3'
miRNA:   3'- -GUCGaC-CCGUUGUa--------------CGUCUUCGaCGa -5'
10867 3' -54.7 NC_002794.1 + 138078 0.66 0.932428
Target:  5'- uCGGUUGaaGGCGA--UGCAGAAGCgGCg -3'
miRNA:   3'- -GUCGAC--CCGUUguACGUCUUCGaCGa -5'
10867 3' -54.7 NC_002794.1 + 125682 0.7 0.783076
Target:  5'- uGGCUgacGGGCGACGUGUu---GCUGCg -3'
miRNA:   3'- gUCGA---CCCGUUGUACGucuuCGACGa -5'
10867 3' -54.7 NC_002794.1 + 122556 0.67 0.921605
Target:  5'- uGGCUGGaCGagaACGcGCAGcGGCUGCUg -3'
miRNA:   3'- gUCGACCcGU---UGUaCGUCuUCGACGA- -5'
10867 3' -54.7 NC_002794.1 + 120793 0.68 0.889549
Target:  5'- uCGGCgaGGGUGACGUuuuuggaGCGGcAGCUGCg -3'
miRNA:   3'- -GUCGa-CCCGUUGUA-------CGUCuUCGACGa -5'
10867 3' -54.7 NC_002794.1 + 120505 0.69 0.836616
Target:  5'- gCAGCccgUGGGCAGCcUGCAGGcgguggcccccgGGCUGa- -3'
miRNA:   3'- -GUCG---ACCCGUUGuACGUCU------------UCGACga -5'
10867 3' -54.7 NC_002794.1 + 117980 0.79 0.295152
Target:  5'- cCAGCUGGuGguACA-GCAGggGCUGCc -3'
miRNA:   3'- -GUCGACC-CguUGUaCGUCuuCGACGa -5'
10867 3' -54.7 NC_002794.1 + 117398 0.67 0.921605
Target:  5'- aAGC-GGGCcuccaccgucgcGACccgcUGCAGGAGCUGCc -3'
miRNA:   3'- gUCGaCCCG------------UUGu---ACGUCUUCGACGa -5'
10867 3' -54.7 NC_002794.1 + 114563 0.67 0.909791
Target:  5'- uCGGCcaGGcGCAGCGUcaGCGGAGGgUGCUc -3'
miRNA:   3'- -GUCGa-CC-CGUUGUA--CGUCUUCgACGA- -5'
10867 3' -54.7 NC_002794.1 + 113376 0.68 0.876018
Target:  5'- gGGUgcGGGCcgccguCGUGCAGgcGCUGCa -3'
miRNA:   3'- gUCGa-CCCGuu----GUACGUCuuCGACGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.