Results 21 - 40 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10867 | 3' | -54.7 | NC_002794.1 | + | 112460 | 0.66 | 0.932428 |
Target: 5'- gCAGCguccGGUAGCG-GCucuGGAGCUGCUc -3' miRNA: 3'- -GUCGac--CCGUUGUaCGu--CUUCGACGA- -5' |
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10867 | 3' | -54.7 | NC_002794.1 | + | 112349 | 0.71 | 0.714373 |
Target: 5'- gCGGCgccGGCGGCGggGCgGGGAGCUGCUg -3' miRNA: 3'- -GUCGac-CCGUUGUa-CG-UCUUCGACGA- -5' |
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10867 | 3' | -54.7 | NC_002794.1 | + | 110425 | 0.66 | 0.932943 |
Target: 5'- aAGCcGGGCGGCugucgucgucggugGCGGAGGCcgGCg -3' miRNA: 3'- gUCGaCCCGUUGua------------CGUCUUCGa-CGa -5' |
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10867 | 3' | -54.7 | NC_002794.1 | + | 104461 | 0.67 | 0.903515 |
Target: 5'- gAGCccGGGCGGCguGUGCAGGAuGCggGCg -3' miRNA: 3'- gUCGa-CCCGUUG--UACGUCUU-CGa-CGa -5' |
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10867 | 3' | -54.7 | NC_002794.1 | + | 102674 | 0.66 | 0.946807 |
Target: 5'- gAGCgUGGGCGACcgGguGucGUacgUGCUg -3' miRNA: 3'- gUCG-ACCCGUUGuaCguCuuCG---ACGA- -5' |
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10867 | 3' | -54.7 | NC_002794.1 | + | 102644 | 0.69 | 0.844911 |
Target: 5'- cCGGCU-GGCGGCGcGCucggAGGAGCUGCc -3' miRNA: 3'- -GUCGAcCCGUUGUaCG----UCUUCGACGa -5' |
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10867 | 3' | -54.7 | NC_002794.1 | + | 98929 | 0.69 | 0.836616 |
Target: 5'- gGGCUGGGCGcgGCcgGgaAGggGCUGg- -3' miRNA: 3'- gUCGACCCGU--UGuaCg-UCuuCGACga -5' |
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10867 | 3' | -54.7 | NC_002794.1 | + | 97249 | 0.67 | 0.921605 |
Target: 5'- -uGUUGGGCAACAguCGGGAGCacgugGCg -3' miRNA: 3'- guCGACCCGUUGUacGUCUUCGa----CGa -5' |
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10867 | 3' | -54.7 | NC_002794.1 | + | 95892 | 0.68 | 0.889549 |
Target: 5'- gCGGCgaGGGCgcacgacGugGUGCGGGAGgUGCa -3' miRNA: 3'- -GUCGa-CCCG-------UugUACGUCUUCgACGa -5' |
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10867 | 3' | -54.7 | NC_002794.1 | + | 94893 | 0.7 | 0.773607 |
Target: 5'- cCGGCUGacggucgacguGGCGACccugaacgagGUGgAGAGGCUGCUg -3' miRNA: 3'- -GUCGAC-----------CCGUUG----------UACgUCUUCGACGA- -5' |
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10867 | 3' | -54.7 | NC_002794.1 | + | 94047 | 0.66 | 0.946807 |
Target: 5'- gAGC--GGCGGCgGUGCGGggGCgGCg -3' miRNA: 3'- gUCGacCCGUUG-UACGUCuuCGaCGa -5' |
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10867 | 3' | -54.7 | NC_002794.1 | + | 92310 | 0.72 | 0.662916 |
Target: 5'- gGGCUGGGCGcggGCG-GCGGggGCccggGCg -3' miRNA: 3'- gUCGACCCGU---UGUaCGUCuuCGa---CGa -5' |
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10867 | 3' | -54.7 | NC_002794.1 | + | 91756 | 0.74 | 0.559096 |
Target: 5'- cCGGC-GGGCGGCAccgcGCAGGacgGGCUGCUg -3' miRNA: 3'- -GUCGaCCCGUUGUa---CGUCU---UCGACGA- -5' |
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10867 | 3' | -54.7 | NC_002794.1 | + | 91119 | 0.69 | 0.836616 |
Target: 5'- gCAGCUGGuGCcguGCGUGgAGGAggcgcggacgguGCUGCUg -3' miRNA: 3'- -GUCGACC-CGu--UGUACgUCUU------------CGACGA- -5' |
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10867 | 3' | -54.7 | NC_002794.1 | + | 91082 | 0.68 | 0.883243 |
Target: 5'- -uGgUGGGCuACggGCucaAGGAGCUGCUg -3' miRNA: 3'- guCgACCCGuUGuaCG---UCUUCGACGA- -5' |
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10867 | 3' | -54.7 | NC_002794.1 | + | 88170 | 0.65 | 0.950692 |
Target: 5'- aCAGUccGGGCAGaa-GCAGAaaaggggGGCUGCg -3' miRNA: 3'- -GUCGa-CCCGUUguaCGUCU-------UCGACGa -5' |
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10867 | 3' | -54.7 | NC_002794.1 | + | 71599 | 0.66 | 0.927141 |
Target: 5'- gCGGCUGGGCgAACA-GCAGccGCUu-- -3' miRNA: 3'- -GUCGACCCG-UUGUaCGUCuuCGAcga -5' |
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10867 | 3' | -54.7 | NC_002794.1 | + | 58745 | 0.69 | 0.828127 |
Target: 5'- gGGCUcaacGGGCAGCugGCGGAGgagccGCUGCUg -3' miRNA: 3'- gUCGA----CCCGUUGuaCGUCUU-----CGACGA- -5' |
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10867 | 3' | -54.7 | NC_002794.1 | + | 58648 | 0.78 | 0.363306 |
Target: 5'- gCAGCUGGGCGACggGCu---GCUGCa -3' miRNA: 3'- -GUCGACCCGUUGuaCGucuuCGACGa -5' |
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10867 | 3' | -54.7 | NC_002794.1 | + | 50590 | 0.73 | 0.609764 |
Target: 5'- gCGGCUGGGUGGCcgGCgccggggggaucgAGAcgAGCUGCUu -3' miRNA: 3'- -GUCGACCCGUUGuaCG-------------UCU--UCGACGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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