miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10867 5' -63.4 NC_002794.1 + 187223 0.66 0.645607
Target:  5'- -cAGCggCUCCGG-CUGGCCGCagcaCAGa -3'
miRNA:   3'- ucUCGgaGAGGCCgGACCGGUGg---GUC- -5'
10867 5' -63.4 NC_002794.1 + 107184 0.66 0.645607
Target:  5'- cGGAGCCggcgCCGccGCCgccGGCCucGCCCGGc -3'
miRNA:   3'- -UCUCGGaga-GGC--CGGa--CCGG--UGGGUC- -5'
10867 5' -63.4 NC_002794.1 + 76956 0.66 0.645607
Target:  5'- gAGAcGCCg-UCCGGCC-GGCCcGCCgAGc -3'
miRNA:   3'- -UCU-CGGagAGGCCGGaCCGG-UGGgUC- -5'
10867 5' -63.4 NC_002794.1 + 45435 0.66 0.645607
Target:  5'- cGAGCgUCUCgCGGaCCcGGUCgcgcgucagcggGCCCAGg -3'
miRNA:   3'- uCUCGgAGAG-GCC-GGaCCGG------------UGGGUC- -5'
10867 5' -63.4 NC_002794.1 + 38454 0.66 0.645607
Target:  5'- aGGAGCCgg-CgCGGCCgcGGCgCGCCCu- -3'
miRNA:   3'- -UCUCGGagaG-GCCGGa-CCG-GUGGGuc -5'
10867 5' -63.4 NC_002794.1 + 181546 0.66 0.645607
Target:  5'- cGGGCCggcgCUCuCGGUCgccgGGCCAaUCAGg -3'
miRNA:   3'- uCUCGGa---GAG-GCCGGa---CCGGUgGGUC- -5'
10867 5' -63.4 NC_002794.1 + 86699 0.66 0.645607
Target:  5'- cGAGCCcggucgcucgUCgaagCC-GCCcGGCCACCUAGa -3'
miRNA:   3'- uCUCGG----------AGa---GGcCGGaCCGGUGGGUC- -5'
10867 5' -63.4 NC_002794.1 + 117207 0.66 0.635938
Target:  5'- cGGGCCcgggcggCUCCGGCCgcgucagGGCgACCg-- -3'
miRNA:   3'- uCUCGGa------GAGGCCGGa------CCGgUGGguc -5'
10867 5' -63.4 NC_002794.1 + 44206 0.66 0.635938
Target:  5'- cGGGCCgacgUCCGGCUcGGgCGCCgAGg -3'
miRNA:   3'- uCUCGGag--AGGCCGGaCCgGUGGgUC- -5'
10867 5' -63.4 NC_002794.1 + 74419 0.66 0.626267
Target:  5'- cGAG-CUCUUCGGCCUGaCgACCuCGGg -3'
miRNA:   3'- uCUCgGAGAGGCCGGACcGgUGG-GUC- -5'
10867 5' -63.4 NC_002794.1 + 86646 0.66 0.626267
Target:  5'- cGAGCCgggacggaugCUCCGGCCcGaGCCcgaCCGGu -3'
miRNA:   3'- uCUCGGa---------GAGGCCGGaC-CGGug-GGUC- -5'
10867 5' -63.4 NC_002794.1 + 185759 0.66 0.6166
Target:  5'- -cAGCCg--CCGGCgC-GGCCGCCCGu -3'
miRNA:   3'- ucUCGGagaGGCCG-GaCCGGUGGGUc -5'
10867 5' -63.4 NC_002794.1 + 123226 0.66 0.606943
Target:  5'- --cGUCUCgagCGGCCUGGCCAUCa-- -3'
miRNA:   3'- ucuCGGAGag-GCCGGACCGGUGGguc -5'
10867 5' -63.4 NC_002794.1 + 183649 0.66 0.597303
Target:  5'- cAGGGCCgccuUCUCCGcGCCgGGCCcgaGCgCCGa -3'
miRNA:   3'- -UCUCGG----AGAGGC-CGGaCCGG---UG-GGUc -5'
10867 5' -63.4 NC_002794.1 + 113851 0.66 0.597303
Target:  5'- -cAGCCUggcgugcagUUCCGGCCaGGCgCGCUCGGc -3'
miRNA:   3'- ucUCGGA---------GAGGCCGGaCCG-GUGGGUC- -5'
10867 5' -63.4 NC_002794.1 + 19585 0.67 0.587686
Target:  5'- cAGuGCCUcCUCCGGCCcGGCgagcgGCCgAGc -3'
miRNA:   3'- -UCuCGGA-GAGGCCGGaCCGg----UGGgUC- -5'
10867 5' -63.4 NC_002794.1 + 123916 0.67 0.587686
Target:  5'- --cGCCUCgcgCCGGaCCU-GCC-CCCGGg -3'
miRNA:   3'- ucuCGGAGa--GGCC-GGAcCGGuGGGUC- -5'
10867 5' -63.4 NC_002794.1 + 510 0.67 0.587686
Target:  5'- uGGGGCgUugcCUCCGGuUCUGGCCcGCCCc- -3'
miRNA:   3'- -UCUCGgA---GAGGCC-GGACCGG-UGGGuc -5'
10867 5' -63.4 NC_002794.1 + 82072 0.67 0.587686
Target:  5'- -cGGCCUCgCCGGCCcucucGGgCACCCc- -3'
miRNA:   3'- ucUCGGAGaGGCCGGa----CCgGUGGGuc -5'
10867 5' -63.4 NC_002794.1 + 43033 0.67 0.581929
Target:  5'- -cGGCCUCcaucgcgcggcaggCCGaGCC-GGCCACCCGa -3'
miRNA:   3'- ucUCGGAGa-------------GGC-CGGaCCGGUGGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.