Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10867 | 5' | -63.4 | NC_002794.1 | + | 53958 | 0.67 | 0.565685 |
Target: 5'- cAGAGCCUCgcgcguccgcuccgUCCGGCUgccCCGCgCCAGc -3' miRNA: 3'- -UCUCGGAG--------------AGGCCGGaccGGUG-GGUC- -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 181435 | 0.67 | 0.578098 |
Target: 5'- -aAGCCg--UCGGCgaggGGCCGCCCGGa -3' miRNA: 3'- ucUCGGagaGGCCGga--CCGGUGGGUC- -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 43033 | 0.67 | 0.581929 |
Target: 5'- -cGGCCUCcaucgcgcggcaggCCGaGCC-GGCCACCCGa -3' miRNA: 3'- ucUCGGAGa-------------GGC-CGGaCCGGUGGGUc -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 82072 | 0.67 | 0.587686 |
Target: 5'- -cGGCCUCgCCGGCCcucucGGgCACCCc- -3' miRNA: 3'- ucUCGGAGaGGCCGGa----CCgGUGGGuc -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 510 | 0.67 | 0.587686 |
Target: 5'- uGGGGCgUugcCUCCGGuUCUGGCCcGCCCc- -3' miRNA: 3'- -UCUCGgA---GAGGCC-GGACCGG-UGGGuc -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 123916 | 0.67 | 0.587686 |
Target: 5'- --cGCCUCgcgCCGGaCCU-GCC-CCCGGg -3' miRNA: 3'- ucuCGGAGa--GGCC-GGAcCGGuGGGUC- -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 86286 | 0.67 | 0.578098 |
Target: 5'- cGAGCCgggacggaugCUCCGGCCcGaGCCcgaCCGGa -3' miRNA: 3'- uCUCGGa---------GAGGCCGGaC-CGGug-GGUC- -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 19585 | 0.67 | 0.587686 |
Target: 5'- cAGuGCCUcCUCCGGCCcGGCgagcgGCCgAGc -3' miRNA: 3'- -UCuCGGA-GAGGCCGGaCCGg----UGGgUC- -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 109281 | 0.68 | 0.484942 |
Target: 5'- uGGAG-CUCUCCGccgacGCgCUGGCCaACCCGa -3' miRNA: 3'- -UCUCgGAGAGGC-----CG-GACCGG-UGGGUc -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 67544 | 0.68 | 0.475998 |
Target: 5'- uGAGCC-CUCCGcCCgGGCCGCgCCGc -3' miRNA: 3'- uCUCGGaGAGGCcGGaCCGGUG-GGUc -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 64390 | 0.68 | 0.503065 |
Target: 5'- --cGCCUCcgccCCGGCCagagGGCCACCg-- -3' miRNA: 3'- ucuCGGAGa---GGCCGGa---CCGGUGGguc -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 104421 | 0.68 | 0.493966 |
Target: 5'- -cGGCCUCggccgCCGGCCcggacGCCGCCgCGGg -3' miRNA: 3'- ucUCGGAGa----GGCCGGac---CGGUGG-GUC- -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 78937 | 0.68 | 0.503065 |
Target: 5'- --cGCCg--CCGGCa-GGUCACCCAGg -3' miRNA: 3'- ucuCGGagaGGCCGgaCCGGUGGGUC- -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 79032 | 0.68 | 0.503065 |
Target: 5'- --cGCCUUcugCCGGCCcGGCCGCUCc- -3' miRNA: 3'- ucuCGGAGa--GGCCGGaCCGGUGGGuc -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 73226 | 0.68 | 0.512236 |
Target: 5'- cGGGGCCUa-CCGGCUccucGGCCACuCCGu -3' miRNA: 3'- -UCUCGGAgaGGCCGGa---CCGGUG-GGUc -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 111601 | 0.68 | 0.521475 |
Target: 5'- cGGGGUgaUCUCCcaGGCCggcggGGCCGCCgCGGc -3' miRNA: 3'- -UCUCGg-AGAGG--CCGGa----CCGGUGG-GUC- -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 185266 | 0.69 | 0.458362 |
Target: 5'- cGGAcGCCg--CCGGCCgagugGGCCGCCggaCAGg -3' miRNA: 3'- -UCU-CGGagaGGCCGGa----CCGGUGG---GUC- -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 25530 | 0.69 | 0.449676 |
Target: 5'- cGGAGCCUCgaugagCCGGCCagucucaGCCGCCg-- -3' miRNA: 3'- -UCUCGGAGa-----GGCCGGac-----CGGUGGguc -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 186012 | 0.69 | 0.449676 |
Target: 5'- --cGCCgCUCCgGGCCcgGGCCcggACCCGGg -3' miRNA: 3'- ucuCGGaGAGG-CCGGa-CCGG---UGGGUC- -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 16593 | 0.69 | 0.441081 |
Target: 5'- --cGCCgUCUCCGGCgUcGCCACCCc- -3' miRNA: 3'- ucuCGG-AGAGGCCGgAcCGGUGGGuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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