Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10867 | 5' | -63.4 | NC_002794.1 | + | 33523 | 1.07 | 0.001086 |
Target: 5'- cAGAGCCUCUCCGGCCUGGCCACCCAGc -3' miRNA: 3'- -UCUCGGAGAGGCCGGACCGGUGGGUC- -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 144031 | 0.77 | 0.144666 |
Target: 5'- cGAGCCguaUCUCCGgcGCCUGGCCGCCg-- -3' miRNA: 3'- uCUCGG---AGAGGC--CGGACCGGUGGguc -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 140295 | 0.76 | 0.179611 |
Target: 5'- uGGGCCUCU-CGGCCaaGGCCugCCGGc -3' miRNA: 3'- uCUCGGAGAgGCCGGa-CCGGugGGUC- -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 191372 | 0.74 | 0.237696 |
Target: 5'- cGGGCCggaccCUCCGcGCCcgcGGCCGCCCAc -3' miRNA: 3'- uCUCGGa----GAGGC-CGGa--CCGGUGGGUc -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 36029 | 0.74 | 0.227025 |
Target: 5'- --cGCCg-UCCGGCCcGGCCGCCCGa -3' miRNA: 3'- ucuCGGagAGGCCGGaCCGGUGGGUc -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 122514 | 0.72 | 0.304015 |
Target: 5'- gAGGGCUUCUCCGGCC-GGaUCGacgaCCAGg -3' miRNA: 3'- -UCUCGGAGAGGCCGGaCC-GGUg---GGUC- -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 90967 | 0.71 | 0.360623 |
Target: 5'- cGGGCCcgCUUCGGCgUGGCCucguaCCGGg -3' miRNA: 3'- uCUCGGa-GAGGCCGgACCGGug---GGUC- -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 79307 | 0.7 | 0.415869 |
Target: 5'- cGAGCgccucgaUCUCaCGGCCUaccugagucagGGCCGCCCGa -3' miRNA: 3'- uCUCGg------AGAG-GCCGGA-----------CCGGUGGGUc -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 14196 | 0.7 | 0.39156 |
Target: 5'- -cAGCgUC-CCGGCCcgcUGGCCGCCCc- -3' miRNA: 3'- ucUCGgAGaGGCCGG---ACCGGUGGGuc -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 25530 | 0.69 | 0.449676 |
Target: 5'- cGGAGCCUCgaugagCCGGCCagucucaGCCGCCg-- -3' miRNA: 3'- -UCUCGGAGa-----GGCCGGac-----CGGUGGguc -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 186012 | 0.69 | 0.449676 |
Target: 5'- --cGCCgCUCCgGGCCcgGGCCcggACCCGGg -3' miRNA: 3'- ucuCGGaGAGG-CCGGa-CCGG---UGGGUC- -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 67722 | 0.69 | 0.441081 |
Target: 5'- cAGGGgCUCggucCCGGCggcGGCCACCCGa -3' miRNA: 3'- -UCUCgGAGa---GGCCGga-CCGGUGGGUc -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 16593 | 0.69 | 0.441081 |
Target: 5'- --cGCCgUCUCCGGCgUcGCCACCCc- -3' miRNA: 3'- ucuCGG-AGAGGCCGgAcCGGUGGGuc -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 105480 | 0.69 | 0.449676 |
Target: 5'- cGAGCCgucgUCUCCGGUCgugGaGCCGCCg-- -3' miRNA: 3'- uCUCGG----AGAGGCCGGa--C-CGGUGGguc -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 185266 | 0.69 | 0.458362 |
Target: 5'- cGGAcGCCg--CCGGCCgagugGGCCGCCggaCAGg -3' miRNA: 3'- -UCU-CGGagaGGCCGGa----CCGGUGG---GUC- -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 67544 | 0.68 | 0.475998 |
Target: 5'- uGAGCC-CUCCGcCCgGGCCGCgCCGc -3' miRNA: 3'- uCUCGGaGAGGCcGGaCCGGUG-GGUc -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 104421 | 0.68 | 0.493966 |
Target: 5'- -cGGCCUCggccgCCGGCCcggacGCCGCCgCGGg -3' miRNA: 3'- ucUCGGAGa----GGCCGGac---CGGUGG-GUC- -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 78937 | 0.68 | 0.503065 |
Target: 5'- --cGCCg--CCGGCa-GGUCACCCAGg -3' miRNA: 3'- ucuCGGagaGGCCGgaCCGGUGGGUC- -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 73226 | 0.68 | 0.512236 |
Target: 5'- cGGGGCCUa-CCGGCUccucGGCCACuCCGu -3' miRNA: 3'- -UCUCGGAgaGGCCGGa---CCGGUG-GGUc -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 64390 | 0.68 | 0.503065 |
Target: 5'- --cGCCUCcgccCCGGCCagagGGCCACCg-- -3' miRNA: 3'- ucuCGGAGa---GGCCGGa---CCGGUGGguc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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