Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10867 | 5' | -63.4 | NC_002794.1 | + | 73226 | 0.68 | 0.512236 |
Target: 5'- cGGGGCCUa-CCGGCUccucGGCCACuCCGu -3' miRNA: 3'- -UCUCGGAgaGGCCGGa---CCGGUG-GGUc -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 111601 | 0.68 | 0.521475 |
Target: 5'- cGGGGUgaUCUCCcaGGCCggcggGGCCGCCgCGGc -3' miRNA: 3'- -UCUCGg-AGAGG--CCGGa----CCGGUGG-GUC- -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 109281 | 0.68 | 0.484942 |
Target: 5'- uGGAG-CUCUCCGccgacGCgCUGGCCaACCCGa -3' miRNA: 3'- -UCUCgGAGAGGC-----CG-GACCGG-UGGGUc -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 53958 | 0.67 | 0.565685 |
Target: 5'- cAGAGCCUCgcgcguccgcuccgUCCGGCUgccCCGCgCCAGc -3' miRNA: 3'- -UCUCGGAG--------------AGGCCGGaccGGUG-GGUC- -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 43033 | 0.67 | 0.581929 |
Target: 5'- -cGGCCUCcaucgcgcggcaggCCGaGCC-GGCCACCCGa -3' miRNA: 3'- ucUCGGAGa-------------GGC-CGGaCCGGUGGGUc -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 82072 | 0.67 | 0.587686 |
Target: 5'- -cGGCCUCgCCGGCCcucucGGgCACCCc- -3' miRNA: 3'- ucUCGGAGaGGCCGGa----CCgGUGGGuc -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 510 | 0.67 | 0.587686 |
Target: 5'- uGGGGCgUugcCUCCGGuUCUGGCCcGCCCc- -3' miRNA: 3'- -UCUCGgA---GAGGCC-GGACCGG-UGGGuc -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 123916 | 0.67 | 0.587686 |
Target: 5'- --cGCCUCgcgCCGGaCCU-GCC-CCCGGg -3' miRNA: 3'- ucuCGGAGa--GGCC-GGAcCGGuGGGUC- -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 86286 | 0.67 | 0.578098 |
Target: 5'- cGAGCCgggacggaugCUCCGGCCcGaGCCcgaCCGGa -3' miRNA: 3'- uCUCGGa---------GAGGCCGGaC-CGGug-GGUC- -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 19585 | 0.67 | 0.587686 |
Target: 5'- cAGuGCCUcCUCCGGCCcGGCgagcgGCCgAGc -3' miRNA: 3'- -UCuCGGA-GAGGCCGGaCCGg----UGGgUC- -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 58126 | 0.67 | 0.530779 |
Target: 5'- cGAGCCcCUgggCGGCCUGGcCCGCCg-- -3' miRNA: 3'- uCUCGGaGAg--GCCGGACC-GGUGGguc -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 83831 | 0.67 | 0.578098 |
Target: 5'- cGAGCC--UCCGGCCgaucGGUCGCCg-- -3' miRNA: 3'- uCUCGGagAGGCCGGa---CCGGUGGguc -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 112555 | 0.67 | 0.549561 |
Target: 5'- cGGGgCUCgCC-GCC-GGCCACCCGGc -3' miRNA: 3'- uCUCgGAGaGGcCGGaCCGGUGGGUC- -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 80990 | 0.67 | 0.530779 |
Target: 5'- --uGCC-CUCCGGUCUGGUCAUCg-- -3' miRNA: 3'- ucuCGGaGAGGCCGGACCGGUGGguc -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 181435 | 0.67 | 0.578098 |
Target: 5'- -aAGCCg--UCGGCgaggGGCCGCCCGGa -3' miRNA: 3'- ucUCGGagaGGCCGga--CCGGUGGGUC- -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 137144 | 0.67 | 0.530779 |
Target: 5'- --cGCCcgC-CCGGCC-GGCCGCCCu- -3' miRNA: 3'- ucuCGGa-GaGGCCGGaCCGGUGGGuc -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 113851 | 0.66 | 0.597303 |
Target: 5'- -cAGCCUggcgugcagUUCCGGCCaGGCgCGCUCGGc -3' miRNA: 3'- ucUCGGA---------GAGGCCGGaCCG-GUGGGUC- -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 185759 | 0.66 | 0.6166 |
Target: 5'- -cAGCCg--CCGGCgC-GGCCGCCCGu -3' miRNA: 3'- ucUCGGagaGGCCG-GaCCGGUGGGUc -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 123226 | 0.66 | 0.606943 |
Target: 5'- --cGUCUCgagCGGCCUGGCCAUCa-- -3' miRNA: 3'- ucuCGGAGag-GCCGGACCGGUGGguc -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 183649 | 0.66 | 0.597303 |
Target: 5'- cAGGGCCgccuUCUCCGcGCCgGGCCcgaGCgCCGa -3' miRNA: 3'- -UCUCGG----AGAGGC-CGGaCCGG---UG-GGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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