miRNA display CGI


Results 1 - 20 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10867 5' -63.4 NC_002794.1 + 33523 1.07 0.001086
Target:  5'- cAGAGCCUCUCCGGCCUGGCCACCCAGc -3'
miRNA:   3'- -UCUCGGAGAGGCCGGACCGGUGGGUC- -5'
10867 5' -63.4 NC_002794.1 + 144031 0.77 0.144666
Target:  5'- cGAGCCguaUCUCCGgcGCCUGGCCGCCg-- -3'
miRNA:   3'- uCUCGG---AGAGGC--CGGACCGGUGGguc -5'
10867 5' -63.4 NC_002794.1 + 140295 0.76 0.179611
Target:  5'- uGGGCCUCU-CGGCCaaGGCCugCCGGc -3'
miRNA:   3'- uCUCGGAGAgGCCGGa-CCGGugGGUC- -5'
10867 5' -63.4 NC_002794.1 + 36029 0.74 0.227025
Target:  5'- --cGCCg-UCCGGCCcGGCCGCCCGa -3'
miRNA:   3'- ucuCGGagAGGCCGGaCCGGUGGGUc -5'
10867 5' -63.4 NC_002794.1 + 191372 0.74 0.237696
Target:  5'- cGGGCCggaccCUCCGcGCCcgcGGCCGCCCAc -3'
miRNA:   3'- uCUCGGa----GAGGC-CGGa--CCGGUGGGUc -5'
10867 5' -63.4 NC_002794.1 + 122514 0.72 0.304015
Target:  5'- gAGGGCUUCUCCGGCC-GGaUCGacgaCCAGg -3'
miRNA:   3'- -UCUCGGAGAGGCCGGaCC-GGUg---GGUC- -5'
10867 5' -63.4 NC_002794.1 + 90967 0.71 0.360623
Target:  5'- cGGGCCcgCUUCGGCgUGGCCucguaCCGGg -3'
miRNA:   3'- uCUCGGa-GAGGCCGgACCGGug---GGUC- -5'
10867 5' -63.4 NC_002794.1 + 14196 0.7 0.39156
Target:  5'- -cAGCgUC-CCGGCCcgcUGGCCGCCCc- -3'
miRNA:   3'- ucUCGgAGaGGCCGG---ACCGGUGGGuc -5'
10867 5' -63.4 NC_002794.1 + 79307 0.7 0.415869
Target:  5'- cGAGCgccucgaUCUCaCGGCCUaccugagucagGGCCGCCCGa -3'
miRNA:   3'- uCUCGg------AGAG-GCCGGA-----------CCGGUGGGUc -5'
10867 5' -63.4 NC_002794.1 + 67722 0.69 0.441081
Target:  5'- cAGGGgCUCggucCCGGCggcGGCCACCCGa -3'
miRNA:   3'- -UCUCgGAGa---GGCCGga-CCGGUGGGUc -5'
10867 5' -63.4 NC_002794.1 + 16593 0.69 0.441081
Target:  5'- --cGCCgUCUCCGGCgUcGCCACCCc- -3'
miRNA:   3'- ucuCGG-AGAGGCCGgAcCGGUGGGuc -5'
10867 5' -63.4 NC_002794.1 + 186012 0.69 0.449676
Target:  5'- --cGCCgCUCCgGGCCcgGGCCcggACCCGGg -3'
miRNA:   3'- ucuCGGaGAGG-CCGGa-CCGG---UGGGUC- -5'
10867 5' -63.4 NC_002794.1 + 25530 0.69 0.449676
Target:  5'- cGGAGCCUCgaugagCCGGCCagucucaGCCGCCg-- -3'
miRNA:   3'- -UCUCGGAGa-----GGCCGGac-----CGGUGGguc -5'
10867 5' -63.4 NC_002794.1 + 105480 0.69 0.449676
Target:  5'- cGAGCCgucgUCUCCGGUCgugGaGCCGCCg-- -3'
miRNA:   3'- uCUCGG----AGAGGCCGGa--C-CGGUGGguc -5'
10867 5' -63.4 NC_002794.1 + 185266 0.69 0.458362
Target:  5'- cGGAcGCCg--CCGGCCgagugGGCCGCCggaCAGg -3'
miRNA:   3'- -UCU-CGGagaGGCCGGa----CCGGUGG---GUC- -5'
10867 5' -63.4 NC_002794.1 + 67544 0.68 0.475998
Target:  5'- uGAGCC-CUCCGcCCgGGCCGCgCCGc -3'
miRNA:   3'- uCUCGGaGAGGCcGGaCCGGUG-GGUc -5'
10867 5' -63.4 NC_002794.1 + 109281 0.68 0.484942
Target:  5'- uGGAG-CUCUCCGccgacGCgCUGGCCaACCCGa -3'
miRNA:   3'- -UCUCgGAGAGGC-----CG-GACCGG-UGGGUc -5'
10867 5' -63.4 NC_002794.1 + 104421 0.68 0.493966
Target:  5'- -cGGCCUCggccgCCGGCCcggacGCCGCCgCGGg -3'
miRNA:   3'- ucUCGGAGa----GGCCGGac---CGGUGG-GUC- -5'
10867 5' -63.4 NC_002794.1 + 79032 0.68 0.503065
Target:  5'- --cGCCUUcugCCGGCCcGGCCGCUCc- -3'
miRNA:   3'- ucuCGGAGa--GGCCGGaCCGGUGGGuc -5'
10867 5' -63.4 NC_002794.1 + 64390 0.68 0.503065
Target:  5'- --cGCCUCcgccCCGGCCagagGGCCACCg-- -3'
miRNA:   3'- ucuCGGAGa---GGCCGGa---CCGGUGGguc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.