miRNA display CGI


Results 41 - 51 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10867 5' -63.4 NC_002794.1 + 74419 0.66 0.626267
Target:  5'- cGAG-CUCUUCGGCCUGaCgACCuCGGg -3'
miRNA:   3'- uCUCgGAGAGGCCGGACcGgUGG-GUC- -5'
10867 5' -63.4 NC_002794.1 + 86646 0.66 0.626267
Target:  5'- cGAGCCgggacggaugCUCCGGCCcGaGCCcgaCCGGu -3'
miRNA:   3'- uCUCGGa---------GAGGCCGGaC-CGGug-GGUC- -5'
10867 5' -63.4 NC_002794.1 + 44206 0.66 0.635938
Target:  5'- cGGGCCgacgUCCGGCUcGGgCGCCgAGg -3'
miRNA:   3'- uCUCGGag--AGGCCGGaCCgGUGGgUC- -5'
10867 5' -63.4 NC_002794.1 + 117207 0.66 0.635938
Target:  5'- cGGGCCcgggcggCUCCGGCCgcgucagGGCgACCg-- -3'
miRNA:   3'- uCUCGGa------GAGGCCGGa------CCGgUGGguc -5'
10867 5' -63.4 NC_002794.1 + 86699 0.66 0.645607
Target:  5'- cGAGCCcggucgcucgUCgaagCC-GCCcGGCCACCUAGa -3'
miRNA:   3'- uCUCGG----------AGa---GGcCGGaCCGGUGGGUC- -5'
10867 5' -63.4 NC_002794.1 + 181546 0.66 0.645607
Target:  5'- cGGGCCggcgCUCuCGGUCgccgGGCCAaUCAGg -3'
miRNA:   3'- uCUCGGa---GAG-GCCGGa---CCGGUgGGUC- -5'
10867 5' -63.4 NC_002794.1 + 38454 0.66 0.645607
Target:  5'- aGGAGCCgg-CgCGGCCgcGGCgCGCCCu- -3'
miRNA:   3'- -UCUCGGagaG-GCCGGa-CCG-GUGGGuc -5'
10867 5' -63.4 NC_002794.1 + 45435 0.66 0.645607
Target:  5'- cGAGCgUCUCgCGGaCCcGGUCgcgcgucagcggGCCCAGg -3'
miRNA:   3'- uCUCGgAGAG-GCC-GGaCCGG------------UGGGUC- -5'
10867 5' -63.4 NC_002794.1 + 76956 0.66 0.645607
Target:  5'- gAGAcGCCg-UCCGGCC-GGCCcGCCgAGc -3'
miRNA:   3'- -UCU-CGGagAGGCCGGaCCGG-UGGgUC- -5'
10867 5' -63.4 NC_002794.1 + 107184 0.66 0.645607
Target:  5'- cGGAGCCggcgCCGccGCCgccGGCCucGCCCGGc -3'
miRNA:   3'- -UCUCGGaga-GGC--CGGa--CCGG--UGGGUC- -5'
10867 5' -63.4 NC_002794.1 + 187223 0.66 0.645607
Target:  5'- -cAGCggCUCCGG-CUGGCCGCagcaCAGa -3'
miRNA:   3'- ucUCGgaGAGGCCgGACCGGUGg---GUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.