miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10867 5' -63.4 NC_002794.1 + 86286 0.67 0.578098
Target:  5'- cGAGCCgggacggaugCUCCGGCCcGaGCCcgaCCGGa -3'
miRNA:   3'- uCUCGGa---------GAGGCCGGaC-CGGug-GGUC- -5'
10867 5' -63.4 NC_002794.1 + 181435 0.67 0.578098
Target:  5'- -aAGCCg--UCGGCgaggGGCCGCCCGGa -3'
miRNA:   3'- ucUCGGagaGGCCGga--CCGGUGGGUC- -5'
10867 5' -63.4 NC_002794.1 + 83831 0.67 0.578098
Target:  5'- cGAGCC--UCCGGCCgaucGGUCGCCg-- -3'
miRNA:   3'- uCUCGGagAGGCCGGa---CCGGUGGguc -5'
10867 5' -63.4 NC_002794.1 + 53958 0.67 0.565685
Target:  5'- cAGAGCCUCgcgcguccgcuccgUCCGGCUgccCCGCgCCAGc -3'
miRNA:   3'- -UCUCGGAG--------------AGGCCGGaccGGUG-GGUC- -5'
10867 5' -63.4 NC_002794.1 + 112555 0.67 0.549561
Target:  5'- cGGGgCUCgCC-GCC-GGCCACCCGGc -3'
miRNA:   3'- uCUCgGAGaGGcCGGaCCGGUGGGUC- -5'
10867 5' -63.4 NC_002794.1 + 58126 0.67 0.530779
Target:  5'- cGAGCCcCUgggCGGCCUGGcCCGCCg-- -3'
miRNA:   3'- uCUCGGaGAg--GCCGGACC-GGUGGguc -5'
10867 5' -63.4 NC_002794.1 + 137144 0.67 0.530779
Target:  5'- --cGCCcgC-CCGGCC-GGCCGCCCu- -3'
miRNA:   3'- ucuCGGa-GaGGCCGGaCCGGUGGGuc -5'
10867 5' -63.4 NC_002794.1 + 80990 0.67 0.530779
Target:  5'- --uGCC-CUCCGGUCUGGUCAUCg-- -3'
miRNA:   3'- ucuCGGaGAGGCCGGACCGGUGGguc -5'
10867 5' -63.4 NC_002794.1 + 111601 0.68 0.521475
Target:  5'- cGGGGUgaUCUCCcaGGCCggcggGGCCGCCgCGGc -3'
miRNA:   3'- -UCUCGg-AGAGG--CCGGa----CCGGUGG-GUC- -5'
10867 5' -63.4 NC_002794.1 + 73226 0.68 0.512236
Target:  5'- cGGGGCCUa-CCGGCUccucGGCCACuCCGu -3'
miRNA:   3'- -UCUCGGAgaGGCCGGa---CCGGUG-GGUc -5'
10867 5' -63.4 NC_002794.1 + 64390 0.68 0.503065
Target:  5'- --cGCCUCcgccCCGGCCagagGGCCACCg-- -3'
miRNA:   3'- ucuCGGAGa---GGCCGGa---CCGGUGGguc -5'
10867 5' -63.4 NC_002794.1 + 78937 0.68 0.503065
Target:  5'- --cGCCg--CCGGCa-GGUCACCCAGg -3'
miRNA:   3'- ucuCGGagaGGCCGgaCCGGUGGGUC- -5'
10867 5' -63.4 NC_002794.1 + 79032 0.68 0.503065
Target:  5'- --cGCCUUcugCCGGCCcGGCCGCUCc- -3'
miRNA:   3'- ucuCGGAGa--GGCCGGaCCGGUGGGuc -5'
10867 5' -63.4 NC_002794.1 + 104421 0.68 0.493966
Target:  5'- -cGGCCUCggccgCCGGCCcggacGCCGCCgCGGg -3'
miRNA:   3'- ucUCGGAGa----GGCCGGac---CGGUGG-GUC- -5'
10867 5' -63.4 NC_002794.1 + 109281 0.68 0.484942
Target:  5'- uGGAG-CUCUCCGccgacGCgCUGGCCaACCCGa -3'
miRNA:   3'- -UCUCgGAGAGGC-----CG-GACCGG-UGGGUc -5'
10867 5' -63.4 NC_002794.1 + 67544 0.68 0.475998
Target:  5'- uGAGCC-CUCCGcCCgGGCCGCgCCGc -3'
miRNA:   3'- uCUCGGaGAGGCcGGaCCGGUG-GGUc -5'
10867 5' -63.4 NC_002794.1 + 185266 0.69 0.458362
Target:  5'- cGGAcGCCg--CCGGCCgagugGGCCGCCggaCAGg -3'
miRNA:   3'- -UCU-CGGagaGGCCGGa----CCGGUGG---GUC- -5'
10867 5' -63.4 NC_002794.1 + 105480 0.69 0.449676
Target:  5'- cGAGCCgucgUCUCCGGUCgugGaGCCGCCg-- -3'
miRNA:   3'- uCUCGG----AGAGGCCGGa--C-CGGUGGguc -5'
10867 5' -63.4 NC_002794.1 + 25530 0.69 0.449676
Target:  5'- cGGAGCCUCgaugagCCGGCCagucucaGCCGCCg-- -3'
miRNA:   3'- -UCUCGGAGa-----GGCCGGac-----CGGUGGguc -5'
10867 5' -63.4 NC_002794.1 + 186012 0.69 0.449676
Target:  5'- --cGCCgCUCCgGGCCcgGGCCcggACCCGGg -3'
miRNA:   3'- ucuCGGaGAGG-CCGGa-CCGG---UGGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.