miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10867 5' -63.4 NC_002794.1 + 510 0.67 0.587686
Target:  5'- uGGGGCgUugcCUCCGGuUCUGGCCcGCCCc- -3'
miRNA:   3'- -UCUCGgA---GAGGCC-GGACCGG-UGGGuc -5'
10867 5' -63.4 NC_002794.1 + 14196 0.7 0.39156
Target:  5'- -cAGCgUC-CCGGCCcgcUGGCCGCCCc- -3'
miRNA:   3'- ucUCGgAGaGGCCGG---ACCGGUGGGuc -5'
10867 5' -63.4 NC_002794.1 + 16593 0.69 0.441081
Target:  5'- --cGCCgUCUCCGGCgUcGCCACCCc- -3'
miRNA:   3'- ucuCGG-AGAGGCCGgAcCGGUGGGuc -5'
10867 5' -63.4 NC_002794.1 + 19585 0.67 0.587686
Target:  5'- cAGuGCCUcCUCCGGCCcGGCgagcgGCCgAGc -3'
miRNA:   3'- -UCuCGGA-GAGGCCGGaCCGg----UGGgUC- -5'
10867 5' -63.4 NC_002794.1 + 25530 0.69 0.449676
Target:  5'- cGGAGCCUCgaugagCCGGCCagucucaGCCGCCg-- -3'
miRNA:   3'- -UCUCGGAGa-----GGCCGGac-----CGGUGGguc -5'
10867 5' -63.4 NC_002794.1 + 33523 1.07 0.001086
Target:  5'- cAGAGCCUCUCCGGCCUGGCCACCCAGc -3'
miRNA:   3'- -UCUCGGAGAGGCCGGACCGGUGGGUC- -5'
10867 5' -63.4 NC_002794.1 + 36029 0.74 0.227025
Target:  5'- --cGCCg-UCCGGCCcGGCCGCCCGa -3'
miRNA:   3'- ucuCGGagAGGCCGGaCCGGUGGGUc -5'
10867 5' -63.4 NC_002794.1 + 38454 0.66 0.645607
Target:  5'- aGGAGCCgg-CgCGGCCgcGGCgCGCCCu- -3'
miRNA:   3'- -UCUCGGagaG-GCCGGa-CCG-GUGGGuc -5'
10867 5' -63.4 NC_002794.1 + 43033 0.67 0.581929
Target:  5'- -cGGCCUCcaucgcgcggcaggCCGaGCC-GGCCACCCGa -3'
miRNA:   3'- ucUCGGAGa-------------GGC-CGGaCCGGUGGGUc -5'
10867 5' -63.4 NC_002794.1 + 44206 0.66 0.635938
Target:  5'- cGGGCCgacgUCCGGCUcGGgCGCCgAGg -3'
miRNA:   3'- uCUCGGag--AGGCCGGaCCgGUGGgUC- -5'
10867 5' -63.4 NC_002794.1 + 45435 0.66 0.645607
Target:  5'- cGAGCgUCUCgCGGaCCcGGUCgcgcgucagcggGCCCAGg -3'
miRNA:   3'- uCUCGgAGAG-GCC-GGaCCGG------------UGGGUC- -5'
10867 5' -63.4 NC_002794.1 + 53958 0.67 0.565685
Target:  5'- cAGAGCCUCgcgcguccgcuccgUCCGGCUgccCCGCgCCAGc -3'
miRNA:   3'- -UCUCGGAG--------------AGGCCGGaccGGUG-GGUC- -5'
10867 5' -63.4 NC_002794.1 + 58126 0.67 0.530779
Target:  5'- cGAGCCcCUgggCGGCCUGGcCCGCCg-- -3'
miRNA:   3'- uCUCGGaGAg--GCCGGACC-GGUGGguc -5'
10867 5' -63.4 NC_002794.1 + 64390 0.68 0.503065
Target:  5'- --cGCCUCcgccCCGGCCagagGGCCACCg-- -3'
miRNA:   3'- ucuCGGAGa---GGCCGGa---CCGGUGGguc -5'
10867 5' -63.4 NC_002794.1 + 67544 0.68 0.475998
Target:  5'- uGAGCC-CUCCGcCCgGGCCGCgCCGc -3'
miRNA:   3'- uCUCGGaGAGGCcGGaCCGGUG-GGUc -5'
10867 5' -63.4 NC_002794.1 + 67722 0.69 0.441081
Target:  5'- cAGGGgCUCggucCCGGCggcGGCCACCCGa -3'
miRNA:   3'- -UCUCgGAGa---GGCCGga-CCGGUGGGUc -5'
10867 5' -63.4 NC_002794.1 + 73226 0.68 0.512236
Target:  5'- cGGGGCCUa-CCGGCUccucGGCCACuCCGu -3'
miRNA:   3'- -UCUCGGAgaGGCCGGa---CCGGUG-GGUc -5'
10867 5' -63.4 NC_002794.1 + 74419 0.66 0.626267
Target:  5'- cGAG-CUCUUCGGCCUGaCgACCuCGGg -3'
miRNA:   3'- uCUCgGAGAGGCCGGACcGgUGG-GUC- -5'
10867 5' -63.4 NC_002794.1 + 76956 0.66 0.645607
Target:  5'- gAGAcGCCg-UCCGGCC-GGCCcGCCgAGc -3'
miRNA:   3'- -UCU-CGGagAGGCCGGaCCGG-UGGgUC- -5'
10867 5' -63.4 NC_002794.1 + 78937 0.68 0.503065
Target:  5'- --cGCCg--CCGGCa-GGUCACCCAGg -3'
miRNA:   3'- ucuCGGagaGGCCGgaCCGGUGGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.