Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10867 | 5' | -63.4 | NC_002794.1 | + | 79032 | 0.68 | 0.503065 |
Target: 5'- --cGCCUUcugCCGGCCcGGCCGCUCc- -3' miRNA: 3'- ucuCGGAGa--GGCCGGaCCGGUGGGuc -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 79307 | 0.7 | 0.415869 |
Target: 5'- cGAGCgccucgaUCUCaCGGCCUaccugagucagGGCCGCCCGa -3' miRNA: 3'- uCUCGg------AGAG-GCCGGA-----------CCGGUGGGUc -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 80990 | 0.67 | 0.530779 |
Target: 5'- --uGCC-CUCCGGUCUGGUCAUCg-- -3' miRNA: 3'- ucuCGGaGAGGCCGGACCGGUGGguc -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 82072 | 0.67 | 0.587686 |
Target: 5'- -cGGCCUCgCCGGCCcucucGGgCACCCc- -3' miRNA: 3'- ucUCGGAGaGGCCGGa----CCgGUGGGuc -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 83831 | 0.67 | 0.578098 |
Target: 5'- cGAGCC--UCCGGCCgaucGGUCGCCg-- -3' miRNA: 3'- uCUCGGagAGGCCGGa---CCGGUGGguc -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 86286 | 0.67 | 0.578098 |
Target: 5'- cGAGCCgggacggaugCUCCGGCCcGaGCCcgaCCGGa -3' miRNA: 3'- uCUCGGa---------GAGGCCGGaC-CGGug-GGUC- -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 86646 | 0.66 | 0.626267 |
Target: 5'- cGAGCCgggacggaugCUCCGGCCcGaGCCcgaCCGGu -3' miRNA: 3'- uCUCGGa---------GAGGCCGGaC-CGGug-GGUC- -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 86699 | 0.66 | 0.645607 |
Target: 5'- cGAGCCcggucgcucgUCgaagCC-GCCcGGCCACCUAGa -3' miRNA: 3'- uCUCGG----------AGa---GGcCGGaCCGGUGGGUC- -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 90967 | 0.71 | 0.360623 |
Target: 5'- cGGGCCcgCUUCGGCgUGGCCucguaCCGGg -3' miRNA: 3'- uCUCGGa-GAGGCCGgACCGGug---GGUC- -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 104421 | 0.68 | 0.493966 |
Target: 5'- -cGGCCUCggccgCCGGCCcggacGCCGCCgCGGg -3' miRNA: 3'- ucUCGGAGa----GGCCGGac---CGGUGG-GUC- -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 105480 | 0.69 | 0.449676 |
Target: 5'- cGAGCCgucgUCUCCGGUCgugGaGCCGCCg-- -3' miRNA: 3'- uCUCGG----AGAGGCCGGa--C-CGGUGGguc -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 107184 | 0.66 | 0.645607 |
Target: 5'- cGGAGCCggcgCCGccGCCgccGGCCucGCCCGGc -3' miRNA: 3'- -UCUCGGaga-GGC--CGGa--CCGG--UGGGUC- -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 109281 | 0.68 | 0.484942 |
Target: 5'- uGGAG-CUCUCCGccgacGCgCUGGCCaACCCGa -3' miRNA: 3'- -UCUCgGAGAGGC-----CG-GACCGG-UGGGUc -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 111601 | 0.68 | 0.521475 |
Target: 5'- cGGGGUgaUCUCCcaGGCCggcggGGCCGCCgCGGc -3' miRNA: 3'- -UCUCGg-AGAGG--CCGGa----CCGGUGG-GUC- -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 112555 | 0.67 | 0.549561 |
Target: 5'- cGGGgCUCgCC-GCC-GGCCACCCGGc -3' miRNA: 3'- uCUCgGAGaGGcCGGaCCGGUGGGUC- -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 113851 | 0.66 | 0.597303 |
Target: 5'- -cAGCCUggcgugcagUUCCGGCCaGGCgCGCUCGGc -3' miRNA: 3'- ucUCGGA---------GAGGCCGGaCCG-GUGGGUC- -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 117207 | 0.66 | 0.635938 |
Target: 5'- cGGGCCcgggcggCUCCGGCCgcgucagGGCgACCg-- -3' miRNA: 3'- uCUCGGa------GAGGCCGGa------CCGgUGGguc -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 122514 | 0.72 | 0.304015 |
Target: 5'- gAGGGCUUCUCCGGCC-GGaUCGacgaCCAGg -3' miRNA: 3'- -UCUCGGAGAGGCCGGaCC-GGUg---GGUC- -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 123226 | 0.66 | 0.606943 |
Target: 5'- --cGUCUCgagCGGCCUGGCCAUCa-- -3' miRNA: 3'- ucuCGGAGag-GCCGGACCGGUGGguc -5' |
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10867 | 5' | -63.4 | NC_002794.1 | + | 123916 | 0.67 | 0.587686 |
Target: 5'- --cGCCUCgcgCCGGaCCU-GCC-CCCGGg -3' miRNA: 3'- ucuCGGAGa--GGCC-GGAcCGGuGGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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