miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10867 5' -63.4 NC_002794.1 + 191372 0.74 0.237696
Target:  5'- cGGGCCggaccCUCCGcGCCcgcGGCCGCCCAc -3'
miRNA:   3'- uCUCGGa----GAGGC-CGGa--CCGGUGGGUc -5'
10867 5' -63.4 NC_002794.1 + 187223 0.66 0.645607
Target:  5'- -cAGCggCUCCGG-CUGGCCGCagcaCAGa -3'
miRNA:   3'- ucUCGgaGAGGCCgGACCGGUGg---GUC- -5'
10867 5' -63.4 NC_002794.1 + 186012 0.69 0.449676
Target:  5'- --cGCCgCUCCgGGCCcgGGCCcggACCCGGg -3'
miRNA:   3'- ucuCGGaGAGG-CCGGa-CCGG---UGGGUC- -5'
10867 5' -63.4 NC_002794.1 + 185759 0.66 0.6166
Target:  5'- -cAGCCg--CCGGCgC-GGCCGCCCGu -3'
miRNA:   3'- ucUCGGagaGGCCG-GaCCGGUGGGUc -5'
10867 5' -63.4 NC_002794.1 + 185266 0.69 0.458362
Target:  5'- cGGAcGCCg--CCGGCCgagugGGCCGCCggaCAGg -3'
miRNA:   3'- -UCU-CGGagaGGCCGGa----CCGGUGG---GUC- -5'
10867 5' -63.4 NC_002794.1 + 183649 0.66 0.597303
Target:  5'- cAGGGCCgccuUCUCCGcGCCgGGCCcgaGCgCCGa -3'
miRNA:   3'- -UCUCGG----AGAGGC-CGGaCCGG---UG-GGUc -5'
10867 5' -63.4 NC_002794.1 + 181546 0.66 0.645607
Target:  5'- cGGGCCggcgCUCuCGGUCgccgGGCCAaUCAGg -3'
miRNA:   3'- uCUCGGa---GAG-GCCGGa---CCGGUgGGUC- -5'
10867 5' -63.4 NC_002794.1 + 181435 0.67 0.578098
Target:  5'- -aAGCCg--UCGGCgaggGGCCGCCCGGa -3'
miRNA:   3'- ucUCGGagaGGCCGga--CCGGUGGGUC- -5'
10867 5' -63.4 NC_002794.1 + 144031 0.77 0.144666
Target:  5'- cGAGCCguaUCUCCGgcGCCUGGCCGCCg-- -3'
miRNA:   3'- uCUCGG---AGAGGC--CGGACCGGUGGguc -5'
10867 5' -63.4 NC_002794.1 + 140295 0.76 0.179611
Target:  5'- uGGGCCUCU-CGGCCaaGGCCugCCGGc -3'
miRNA:   3'- uCUCGGAGAgGCCGGa-CCGGugGGUC- -5'
10867 5' -63.4 NC_002794.1 + 137144 0.67 0.530779
Target:  5'- --cGCCcgC-CCGGCC-GGCCGCCCu- -3'
miRNA:   3'- ucuCGGa-GaGGCCGGaCCGGUGGGuc -5'
10867 5' -63.4 NC_002794.1 + 123916 0.67 0.587686
Target:  5'- --cGCCUCgcgCCGGaCCU-GCC-CCCGGg -3'
miRNA:   3'- ucuCGGAGa--GGCC-GGAcCGGuGGGUC- -5'
10867 5' -63.4 NC_002794.1 + 123226 0.66 0.606943
Target:  5'- --cGUCUCgagCGGCCUGGCCAUCa-- -3'
miRNA:   3'- ucuCGGAGag-GCCGGACCGGUGGguc -5'
10867 5' -63.4 NC_002794.1 + 122514 0.72 0.304015
Target:  5'- gAGGGCUUCUCCGGCC-GGaUCGacgaCCAGg -3'
miRNA:   3'- -UCUCGGAGAGGCCGGaCC-GGUg---GGUC- -5'
10867 5' -63.4 NC_002794.1 + 117207 0.66 0.635938
Target:  5'- cGGGCCcgggcggCUCCGGCCgcgucagGGCgACCg-- -3'
miRNA:   3'- uCUCGGa------GAGGCCGGa------CCGgUGGguc -5'
10867 5' -63.4 NC_002794.1 + 113851 0.66 0.597303
Target:  5'- -cAGCCUggcgugcagUUCCGGCCaGGCgCGCUCGGc -3'
miRNA:   3'- ucUCGGA---------GAGGCCGGaCCG-GUGGGUC- -5'
10867 5' -63.4 NC_002794.1 + 112555 0.67 0.549561
Target:  5'- cGGGgCUCgCC-GCC-GGCCACCCGGc -3'
miRNA:   3'- uCUCgGAGaGGcCGGaCCGGUGGGUC- -5'
10867 5' -63.4 NC_002794.1 + 111601 0.68 0.521475
Target:  5'- cGGGGUgaUCUCCcaGGCCggcggGGCCGCCgCGGc -3'
miRNA:   3'- -UCUCGg-AGAGG--CCGGa----CCGGUGG-GUC- -5'
10867 5' -63.4 NC_002794.1 + 109281 0.68 0.484942
Target:  5'- uGGAG-CUCUCCGccgacGCgCUGGCCaACCCGa -3'
miRNA:   3'- -UCUCgGAGAGGC-----CG-GACCGG-UGGGUc -5'
10867 5' -63.4 NC_002794.1 + 107184 0.66 0.645607
Target:  5'- cGGAGCCggcgCCGccGCCgccGGCCucGCCCGGc -3'
miRNA:   3'- -UCUCGGaga-GGC--CGGa--CCGG--UGGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.