Results 21 - 40 of 51 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10867 | 5' | -63.4 | NC_002794.1 | + | 105480 | 0.69 | 0.449676 |
Target: 5'- cGAGCCgucgUCUCCGGUCgugGaGCCGCCg-- -3' miRNA: 3'- uCUCGG----AGAGGCCGGa--C-CGGUGGguc -5' |
|||||||
10867 | 5' | -63.4 | NC_002794.1 | + | 104421 | 0.68 | 0.493966 |
Target: 5'- -cGGCCUCggccgCCGGCCcggacGCCGCCgCGGg -3' miRNA: 3'- ucUCGGAGa----GGCCGGac---CGGUGG-GUC- -5' |
|||||||
10867 | 5' | -63.4 | NC_002794.1 | + | 90967 | 0.71 | 0.360623 |
Target: 5'- cGGGCCcgCUUCGGCgUGGCCucguaCCGGg -3' miRNA: 3'- uCUCGGa-GAGGCCGgACCGGug---GGUC- -5' |
|||||||
10867 | 5' | -63.4 | NC_002794.1 | + | 86699 | 0.66 | 0.645607 |
Target: 5'- cGAGCCcggucgcucgUCgaagCC-GCCcGGCCACCUAGa -3' miRNA: 3'- uCUCGG----------AGa---GGcCGGaCCGGUGGGUC- -5' |
|||||||
10867 | 5' | -63.4 | NC_002794.1 | + | 86646 | 0.66 | 0.626267 |
Target: 5'- cGAGCCgggacggaugCUCCGGCCcGaGCCcgaCCGGu -3' miRNA: 3'- uCUCGGa---------GAGGCCGGaC-CGGug-GGUC- -5' |
|||||||
10867 | 5' | -63.4 | NC_002794.1 | + | 86286 | 0.67 | 0.578098 |
Target: 5'- cGAGCCgggacggaugCUCCGGCCcGaGCCcgaCCGGa -3' miRNA: 3'- uCUCGGa---------GAGGCCGGaC-CGGug-GGUC- -5' |
|||||||
10867 | 5' | -63.4 | NC_002794.1 | + | 83831 | 0.67 | 0.578098 |
Target: 5'- cGAGCC--UCCGGCCgaucGGUCGCCg-- -3' miRNA: 3'- uCUCGGagAGGCCGGa---CCGGUGGguc -5' |
|||||||
10867 | 5' | -63.4 | NC_002794.1 | + | 82072 | 0.67 | 0.587686 |
Target: 5'- -cGGCCUCgCCGGCCcucucGGgCACCCc- -3' miRNA: 3'- ucUCGGAGaGGCCGGa----CCgGUGGGuc -5' |
|||||||
10867 | 5' | -63.4 | NC_002794.1 | + | 80990 | 0.67 | 0.530779 |
Target: 5'- --uGCC-CUCCGGUCUGGUCAUCg-- -3' miRNA: 3'- ucuCGGaGAGGCCGGACCGGUGGguc -5' |
|||||||
10867 | 5' | -63.4 | NC_002794.1 | + | 79307 | 0.7 | 0.415869 |
Target: 5'- cGAGCgccucgaUCUCaCGGCCUaccugagucagGGCCGCCCGa -3' miRNA: 3'- uCUCGg------AGAG-GCCGGA-----------CCGGUGGGUc -5' |
|||||||
10867 | 5' | -63.4 | NC_002794.1 | + | 79032 | 0.68 | 0.503065 |
Target: 5'- --cGCCUUcugCCGGCCcGGCCGCUCc- -3' miRNA: 3'- ucuCGGAGa--GGCCGGaCCGGUGGGuc -5' |
|||||||
10867 | 5' | -63.4 | NC_002794.1 | + | 78937 | 0.68 | 0.503065 |
Target: 5'- --cGCCg--CCGGCa-GGUCACCCAGg -3' miRNA: 3'- ucuCGGagaGGCCGgaCCGGUGGGUC- -5' |
|||||||
10867 | 5' | -63.4 | NC_002794.1 | + | 76956 | 0.66 | 0.645607 |
Target: 5'- gAGAcGCCg-UCCGGCC-GGCCcGCCgAGc -3' miRNA: 3'- -UCU-CGGagAGGCCGGaCCGG-UGGgUC- -5' |
|||||||
10867 | 5' | -63.4 | NC_002794.1 | + | 74419 | 0.66 | 0.626267 |
Target: 5'- cGAG-CUCUUCGGCCUGaCgACCuCGGg -3' miRNA: 3'- uCUCgGAGAGGCCGGACcGgUGG-GUC- -5' |
|||||||
10867 | 5' | -63.4 | NC_002794.1 | + | 73226 | 0.68 | 0.512236 |
Target: 5'- cGGGGCCUa-CCGGCUccucGGCCACuCCGu -3' miRNA: 3'- -UCUCGGAgaGGCCGGa---CCGGUG-GGUc -5' |
|||||||
10867 | 5' | -63.4 | NC_002794.1 | + | 67722 | 0.69 | 0.441081 |
Target: 5'- cAGGGgCUCggucCCGGCggcGGCCACCCGa -3' miRNA: 3'- -UCUCgGAGa---GGCCGga-CCGGUGGGUc -5' |
|||||||
10867 | 5' | -63.4 | NC_002794.1 | + | 67544 | 0.68 | 0.475998 |
Target: 5'- uGAGCC-CUCCGcCCgGGCCGCgCCGc -3' miRNA: 3'- uCUCGGaGAGGCcGGaCCGGUG-GGUc -5' |
|||||||
10867 | 5' | -63.4 | NC_002794.1 | + | 64390 | 0.68 | 0.503065 |
Target: 5'- --cGCCUCcgccCCGGCCagagGGCCACCg-- -3' miRNA: 3'- ucuCGGAGa---GGCCGGa---CCGGUGGguc -5' |
|||||||
10867 | 5' | -63.4 | NC_002794.1 | + | 58126 | 0.67 | 0.530779 |
Target: 5'- cGAGCCcCUgggCGGCCUGGcCCGCCg-- -3' miRNA: 3'- uCUCGGaGAg--GCCGGACC-GGUGGguc -5' |
|||||||
10867 | 5' | -63.4 | NC_002794.1 | + | 53958 | 0.67 | 0.565685 |
Target: 5'- cAGAGCCUCgcgcguccgcuccgUCCGGCUgccCCGCgCCAGc -3' miRNA: 3'- -UCUCGGAG--------------AGGCCGGaccGGUG-GGUC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home