miRNA display CGI


Results 41 - 51 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10867 5' -63.4 NC_002794.1 + 83831 0.67 0.578098
Target:  5'- cGAGCC--UCCGGCCgaucGGUCGCCg-- -3'
miRNA:   3'- uCUCGGagAGGCCGGa---CCGGUGGguc -5'
10867 5' -63.4 NC_002794.1 + 53958 0.67 0.565685
Target:  5'- cAGAGCCUCgcgcguccgcuccgUCCGGCUgccCCGCgCCAGc -3'
miRNA:   3'- -UCUCGGAG--------------AGGCCGGaccGGUG-GGUC- -5'
10867 5' -63.4 NC_002794.1 + 181435 0.67 0.578098
Target:  5'- -aAGCCg--UCGGCgaggGGCCGCCCGGa -3'
miRNA:   3'- ucUCGGagaGGCCGga--CCGGUGGGUC- -5'
10867 5' -63.4 NC_002794.1 + 43033 0.67 0.581929
Target:  5'- -cGGCCUCcaucgcgcggcaggCCGaGCC-GGCCACCCGa -3'
miRNA:   3'- ucUCGGAGa-------------GGC-CGGaCCGGUGGGUc -5'
10867 5' -63.4 NC_002794.1 + 19585 0.67 0.587686
Target:  5'- cAGuGCCUcCUCCGGCCcGGCgagcgGCCgAGc -3'
miRNA:   3'- -UCuCGGA-GAGGCCGGaCCGg----UGGgUC- -5'
10867 5' -63.4 NC_002794.1 + 86286 0.67 0.578098
Target:  5'- cGAGCCgggacggaugCUCCGGCCcGaGCCcgaCCGGa -3'
miRNA:   3'- uCUCGGa---------GAGGCCGGaC-CGGug-GGUC- -5'
10867 5' -63.4 NC_002794.1 + 123916 0.67 0.587686
Target:  5'- --cGCCUCgcgCCGGaCCU-GCC-CCCGGg -3'
miRNA:   3'- ucuCGGAGa--GGCC-GGAcCGGuGGGUC- -5'
10867 5' -63.4 NC_002794.1 + 510 0.67 0.587686
Target:  5'- uGGGGCgUugcCUCCGGuUCUGGCCcGCCCc- -3'
miRNA:   3'- -UCUCGgA---GAGGCC-GGACCGG-UGGGuc -5'
10867 5' -63.4 NC_002794.1 + 82072 0.67 0.587686
Target:  5'- -cGGCCUCgCCGGCCcucucGGgCACCCc- -3'
miRNA:   3'- ucUCGGAGaGGCCGGa----CCgGUGGGuc -5'
10867 5' -63.4 NC_002794.1 + 113851 0.66 0.597303
Target:  5'- -cAGCCUggcgugcagUUCCGGCCaGGCgCGCUCGGc -3'
miRNA:   3'- ucUCGGA---------GAGGCCGGaCCG-GUGGGUC- -5'
10867 5' -63.4 NC_002794.1 + 187223 0.66 0.645607
Target:  5'- -cAGCggCUCCGG-CUGGCCGCagcaCAGa -3'
miRNA:   3'- ucUCGgaGAGGCCgGACCGGUGg---GUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.