miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10868 3' -58.7 NC_002794.1 + 18906 0.66 0.851454
Target:  5'- --cUCCCCgacgGCGCCcggaCUGGCGCUgGAu -3'
miRNA:   3'- acaAGGGG----UGCGGc---GACUGCGAgCUu -5'
10868 3' -58.7 NC_002794.1 + 185559 0.66 0.851454
Target:  5'- cGcgCCCCGCccuGCCGCggcagGGCGCgCGGc -3'
miRNA:   3'- aCaaGGGGUG---CGGCGa----CUGCGaGCUu -5'
10868 3' -58.7 NC_002794.1 + 69358 0.66 0.843678
Target:  5'- cGUUCCCCGCGgaGaucgGGCGCgaCGAAg -3'
miRNA:   3'- aCAAGGGGUGCggCga--CUGCGa-GCUU- -5'
10868 3' -58.7 NC_002794.1 + 17105 0.66 0.843678
Target:  5'- cGUUCCCgACGaUCGCcuuuccGACGgUCGAAg -3'
miRNA:   3'- aCAAGGGgUGC-GGCGa-----CUGCgAGCUU- -5'
10868 3' -58.7 NC_002794.1 + 192642 0.66 0.83572
Target:  5'- cGcUCCagCCGCGCCGCcGcGCGCUCGc- -3'
miRNA:   3'- aCaAGG--GGUGCGGCGaC-UGCGAGCuu -5'
10868 3' -58.7 NC_002794.1 + 184514 0.66 0.83572
Target:  5'- cGggCCCCGCG-CGC-GGCGCgggCGAc -3'
miRNA:   3'- aCaaGGGGUGCgGCGaCUGCGa--GCUu -5'
10868 3' -58.7 NC_002794.1 + 107751 0.66 0.827586
Target:  5'- cGcUUCgCGCGCCGCUGgcuggagcGCGCUCGc- -3'
miRNA:   3'- aCaAGGgGUGCGGCGAC--------UGCGAGCuu -5'
10868 3' -58.7 NC_002794.1 + 128876 0.66 0.819282
Target:  5'- cGUgaCCCUuuGCCGCUGuacggaGCUCGAGc -3'
miRNA:   3'- aCAa-GGGGugCGGCGACug----CGAGCUU- -5'
10868 3' -58.7 NC_002794.1 + 188963 0.66 0.819282
Target:  5'- gGUUCagguCCACGCCGCcca-GCUCGGc -3'
miRNA:   3'- aCAAGg---GGUGCGGCGacugCGAGCUu -5'
10868 3' -58.7 NC_002794.1 + 33666 0.66 0.819282
Target:  5'- cGUgcaCUCGCGCuCGCUG-CGCUCGc- -3'
miRNA:   3'- aCAag-GGGUGCG-GCGACuGCGAGCuu -5'
10868 3' -58.7 NC_002794.1 + 186949 0.66 0.810818
Target:  5'- cGgcCCCCGgGCCGCUGGcCGC-CGc- -3'
miRNA:   3'- aCaaGGGGUgCGGCGACU-GCGaGCuu -5'
10868 3' -58.7 NC_002794.1 + 43150 0.66 0.810818
Target:  5'- cGUUCCCCA-GCgCGCaGA-GCUCGGc -3'
miRNA:   3'- aCAAGGGGUgCG-GCGaCUgCGAGCUu -5'
10868 3' -58.7 NC_002794.1 + 191765 0.67 0.802199
Target:  5'- ---cCCCCucggaauCGuCCGC-GACGCUCGAAc -3'
miRNA:   3'- acaaGGGGu------GC-GGCGaCUGCGAGCUU- -5'
10868 3' -58.7 NC_002794.1 + 19789 0.67 0.802199
Target:  5'- gUGcUCCUgACGCUGCUc-CGCUCGGAc -3'
miRNA:   3'- -ACaAGGGgUGCGGCGAcuGCGAGCUU- -5'
10868 3' -58.7 NC_002794.1 + 83222 0.67 0.793434
Target:  5'- cGUgaUCCUCGCGCuCGCggacgaGACGCUCu-- -3'
miRNA:   3'- aCA--AGGGGUGCG-GCGa-----CUGCGAGcuu -5'
10868 3' -58.7 NC_002794.1 + 105647 0.67 0.775496
Target:  5'- cGUUCUCCGucuCGCCGCggcGCGCUCc-- -3'
miRNA:   3'- aCAAGGGGU---GCGGCGac-UGCGAGcuu -5'
10868 3' -58.7 NC_002794.1 + 41237 0.67 0.775496
Target:  5'- ---cUCCCACGCCGCggccgccGACGC-CGGc -3'
miRNA:   3'- acaaGGGGUGCGGCGa------CUGCGaGCUu -5'
10868 3' -58.7 NC_002794.1 + 86005 0.67 0.766341
Target:  5'- gGUUCCgaAC-CCGCUGGCGC-CGAc -3'
miRNA:   3'- aCAAGGggUGcGGCGACUGCGaGCUu -5'
10868 3' -58.7 NC_002794.1 + 106212 0.68 0.738228
Target:  5'- cGUuagUCCaCCGuCGCCGCggccGCGCUCGGGu -3'
miRNA:   3'- aCA---AGG-GGU-GCGGCGac--UGCGAGCUU- -5'
10868 3' -58.7 NC_002794.1 + 74003 0.68 0.719033
Target:  5'- cUGgUCCCCACGCUGCgccUGUUCGGc -3'
miRNA:   3'- -ACaAGGGGUGCGGCGacuGCGAGCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.