miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10868 5' -60.8 NC_002794.1 + 149665 0.66 0.798299
Target:  5'- aGGCc-GAGCGgGGGCgcgucgcgcucgacuGGCCGCGGGg- -3'
miRNA:   3'- -CCGcaCUUGCaCUCG---------------CCGGCGCCCgu -5'
10868 5' -60.8 NC_002794.1 + 126953 0.66 0.79488
Target:  5'- uGCGUuuGAGCGacgaccgcgaGAGCGGCCGCGuguuGGUg -3'
miRNA:   3'- cCGCA--CUUGCa---------CUCGCCGGCGC----CCGu -5'
10868 5' -60.8 NC_002794.1 + 90978 0.66 0.79488
Target:  5'- cGGCGUGGccuCGUaccGGGCcgaGGCggaGCGGGCc -3'
miRNA:   3'- -CCGCACUu--GCA---CUCG---CCGg--CGCCCGu -5'
10868 5' -60.8 NC_002794.1 + 107883 0.66 0.79488
Target:  5'- aGGCGgcgcGGCGgGuGCGGCUGcCGGGUc -3'
miRNA:   3'- -CCGCac--UUGCaCuCGCCGGC-GCCCGu -5'
10868 5' -60.8 NC_002794.1 + 109167 0.66 0.79488
Target:  5'- uGGCGacGAGCGgcgGuAGCGGCggaggcaGCGGGUc -3'
miRNA:   3'- -CCGCa-CUUGCa--C-UCGCCGg------CGCCCGu -5'
10868 5' -60.8 NC_002794.1 + 137851 0.66 0.79488
Target:  5'- aGGCGgaugGAGCGcgaccacaUGuGCGGCgucugGUGGGCGa -3'
miRNA:   3'- -CCGCa---CUUGC--------ACuCGCCGg----CGCCCGU- -5'
10868 5' -60.8 NC_002794.1 + 136097 0.66 0.79488
Target:  5'- aGGCGUaGACGUcGGCGuCCugcaccugGCGGGCGa -3'
miRNA:   3'- -CCGCAcUUGCAcUCGCcGG--------CGCCCGU- -5'
10868 5' -60.8 NC_002794.1 + 143468 0.66 0.794023
Target:  5'- cGCGaUGAACGgcuGGCagacgaugucgcuGGCCGCGGGg- -3'
miRNA:   3'- cCGC-ACUUGCac-UCG-------------CCGGCGCCCgu -5'
10868 5' -60.8 NC_002794.1 + 132583 0.66 0.793164
Target:  5'- gGGUGggccgcuucaccGGGCGUGAcGUGGUucaGCGGGCGa -3'
miRNA:   3'- -CCGCa-----------CUUGCACU-CGCCGg--CGCCCGU- -5'
10868 5' -60.8 NC_002794.1 + 53473 0.66 0.789714
Target:  5'- uGCGUGAGgccaGUGAGCacguacacgagcucGCCGUGGGUc -3'
miRNA:   3'- cCGCACUUg---CACUCGc-------------CGGCGCCCGu -5'
10868 5' -60.8 NC_002794.1 + 82129 0.66 0.786244
Target:  5'- cGGCGUGGgcgucACGUGGGCGGacacccggcCCGaCGgcuccGGCGc -3'
miRNA:   3'- -CCGCACU-----UGCACUCGCC---------GGC-GC-----CCGU- -5'
10868 5' -60.8 NC_002794.1 + 138956 0.66 0.786244
Target:  5'- uGGCGUGcugcgacgcGGCGgacGGGuUGGCCugGCGGGCc -3'
miRNA:   3'- -CCGCAC---------UUGCa--CUC-GCCGG--CGCCCGu -5'
10868 5' -60.8 NC_002794.1 + 184039 0.66 0.777483
Target:  5'- cGCGcGcAGCGc--GCGGUCGCGGGCc -3'
miRNA:   3'- cCGCaC-UUGCacuCGCCGGCGCCCGu -5'
10868 5' -60.8 NC_002794.1 + 117201 0.66 0.777483
Target:  5'- cGGCGUcGGGCccGGGCggcuccGGCCGCgucaGGGCGa -3'
miRNA:   3'- -CCGCA-CUUGcaCUCG------CCGGCG----CCCGU- -5'
10868 5' -60.8 NC_002794.1 + 126627 0.66 0.768604
Target:  5'- cGGCGUGAGCGcgaccGGGCGcccggacgcGCCGagagaccgaCGGGCc -3'
miRNA:   3'- -CCGCACUUGCa----CUCGC---------CGGC---------GCCCGu -5'
10868 5' -60.8 NC_002794.1 + 145570 0.66 0.768604
Target:  5'- cGCGgacGAGCGccgacgGAGCGGCgGCcGGCu -3'
miRNA:   3'- cCGCa--CUUGCa-----CUCGCCGgCGcCCGu -5'
10868 5' -60.8 NC_002794.1 + 115880 0.66 0.768604
Target:  5'- gGGCGUccgGGGCGUccGCGGagCGCGGGgGg -3'
miRNA:   3'- -CCGCA---CUUGCAcuCGCCg-GCGCCCgU- -5'
10868 5' -60.8 NC_002794.1 + 138467 0.66 0.768604
Target:  5'- -aCGUGGACGUGAccgucucgucgGCGGUCccgGCGGGg- -3'
miRNA:   3'- ccGCACUUGCACU-----------CGCCGG---CGCCCgu -5'
10868 5' -60.8 NC_002794.1 + 91047 0.66 0.763224
Target:  5'- cGGgGUGGACG-GGGCGcgcgucgucauguacGCCGUgguGGGCu -3'
miRNA:   3'- -CCgCACUUGCaCUCGC---------------CGGCG---CCCGu -5'
10868 5' -60.8 NC_002794.1 + 126377 0.66 0.759616
Target:  5'- uGCGUGGGCGcc-GgGGCCuGCGcGGCGg -3'
miRNA:   3'- cCGCACUUGCacuCgCCGG-CGC-CCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.