miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10868 5' -60.8 NC_002794.1 + 115978 0.66 0.759616
Target:  5'- aGCG-GGACGggGAGCGGCgcCGCGGagaccGCGg -3'
miRNA:   3'- cCGCaCUUGCa-CUCGCCG--GCGCC-----CGU- -5'
10868 5' -60.8 NC_002794.1 + 51257 0.66 0.750527
Target:  5'- aGGCGUGg----GGGCgGGCCGgGaGGCAg -3'
miRNA:   3'- -CCGCACuugcaCUCG-CCGGCgC-CCGU- -5'
10868 5' -60.8 NC_002794.1 + 58072 0.66 0.750527
Target:  5'- cGGCGgcgGGACG--GGCGGCC-CGGcGCc -3'
miRNA:   3'- -CCGCa--CUUGCacUCGCCGGcGCC-CGu -5'
10868 5' -60.8 NC_002794.1 + 38104 0.66 0.750527
Target:  5'- cGGCGUGAagacGCGgGAGa-GCCGCgccagcugGGGCGu -3'
miRNA:   3'- -CCGCACU----UGCaCUCgcCGGCG--------CCCGU- -5'
10868 5' -60.8 NC_002794.1 + 42575 0.66 0.749613
Target:  5'- cGGCGgacccgcGGACGgagGAgggcgcgGCGGCCgggaGCGGGCu -3'
miRNA:   3'- -CCGCa------CUUGCa--CU-------CGCCGG----CGCCCGu -5'
10868 5' -60.8 NC_002794.1 + 44353 0.67 0.741345
Target:  5'- cGGCGaGAcCGaGAGC-GCgGCGGGCGc -3'
miRNA:   3'- -CCGCaCUuGCaCUCGcCGgCGCCCGU- -5'
10868 5' -60.8 NC_002794.1 + 34719 0.67 0.741345
Target:  5'- cGGCGccacGAgGCGcGGGCGGCCGCaGaGCGc -3'
miRNA:   3'- -CCGCa---CU-UGCaCUCGCCGGCGcC-CGU- -5'
10868 5' -60.8 NC_002794.1 + 115646 0.67 0.732076
Target:  5'- gGGCGUGAGCcagGAGCuGgUGCaGGCGg -3'
miRNA:   3'- -CCGCACUUGca-CUCGcCgGCGcCCGU- -5'
10868 5' -60.8 NC_002794.1 + 37762 0.67 0.732076
Target:  5'- cGGCGccGGCGgGAGCGGCCGuCGucgucGGCc -3'
miRNA:   3'- -CCGCacUUGCaCUCGCCGGC-GC-----CCGu -5'
10868 5' -60.8 NC_002794.1 + 94779 0.67 0.732076
Target:  5'- aGGCGcUGGGCGaguucGAGCGGCaCGgGgauGGCAg -3'
miRNA:   3'- -CCGC-ACUUGCa----CUCGCCG-GCgC---CCGU- -5'
10868 5' -60.8 NC_002794.1 + 30207 0.67 0.72273
Target:  5'- gGGCGUGAuguACGUGuuccguucguacGGCaGCCGCaucGGGUu -3'
miRNA:   3'- -CCGCACU---UGCAC------------UCGcCGGCG---CCCGu -5'
10868 5' -60.8 NC_002794.1 + 184491 0.67 0.72273
Target:  5'- gGGCcccGGACGcccGGGCGG-CGCGGGCc -3'
miRNA:   3'- -CCGca-CUUGCa--CUCGCCgGCGCCCGu -5'
10868 5' -60.8 NC_002794.1 + 110266 0.67 0.721791
Target:  5'- cGGCGUc-GCGacGGCGGCCGCcguccucGGGCc -3'
miRNA:   3'- -CCGCAcuUGCacUCGCCGGCG-------CCCGu -5'
10868 5' -60.8 NC_002794.1 + 123813 0.67 0.717088
Target:  5'- gGGCGcGGACGagcagGAGCGGCgcccgucgauccggaUGCcGGGCGu -3'
miRNA:   3'- -CCGCaCUUGCa----CUCGCCG---------------GCG-CCCGU- -5'
10868 5' -60.8 NC_002794.1 + 124007 0.67 0.713314
Target:  5'- -aCGUGAA-GcGGGCGGCCGCGGa-- -3'
miRNA:   3'- ccGCACUUgCaCUCGCCGGCGCCcgu -5'
10868 5' -60.8 NC_002794.1 + 19444 0.67 0.703835
Target:  5'- aGGCcccGAGCGggcacGAGCGGCgGCGGcgGCGg -3'
miRNA:   3'- -CCGca-CUUGCa----CUCGCCGgCGCC--CGU- -5'
10868 5' -60.8 NC_002794.1 + 80421 0.67 0.703835
Target:  5'- uGGCGccGGGCG-GGGCcGCCGCcGGCGg -3'
miRNA:   3'- -CCGCa-CUUGCaCUCGcCGGCGcCCGU- -5'
10868 5' -60.8 NC_002794.1 + 183593 0.68 0.675104
Target:  5'- cGGUGgGGGCGgaGGGgGGCCGCGcGCGg -3'
miRNA:   3'- -CCGCaCUUGCa-CUCgCCGGCGCcCGU- -5'
10868 5' -60.8 NC_002794.1 + 142376 0.68 0.675104
Target:  5'- aGGCGgaggGAGCGgcgGAGaCGGCgGUGcaGGCGg -3'
miRNA:   3'- -CCGCa---CUUGCa--CUC-GCCGgCGC--CCGU- -5'
10868 5' -60.8 NC_002794.1 + 112356 0.68 0.675104
Target:  5'- cGGCGgcgGGGCGggGAGCugcuggaacucGGCaCGCaGGGCGg -3'
miRNA:   3'- -CCGCa--CUUGCa-CUCG-----------CCG-GCG-CCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.