miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10868 5' -60.8 NC_002794.1 + 9146 0.68 0.65578
Target:  5'- cGCGaGAGacUGUGAGUgaaccGGUCGCGGGCu -3'
miRNA:   3'- cCGCaCUU--GCACUCG-----CCGGCGCCCGu -5'
10868 5' -60.8 NC_002794.1 + 11512 0.68 0.665454
Target:  5'- -cCGaUGAACGUGAcgauCGaGCUGCGGGCGa -3'
miRNA:   3'- ccGC-ACUUGCACUc---GC-CGGCGCCCGU- -5'
10868 5' -60.8 NC_002794.1 + 12787 0.69 0.607292
Target:  5'- cGGCGaGAACGUGAcgauCGGCC-CGGGg- -3'
miRNA:   3'- -CCGCaCUUGCACUc---GCCGGcGCCCgu -5'
10868 5' -60.8 NC_002794.1 + 13265 0.69 0.601485
Target:  5'- gGGCuGUGGug--GAGCGGCCGCuguugacggcggcauGGGCGc -3'
miRNA:   3'- -CCG-CACUugcaCUCGCCGGCG---------------CCCGU- -5'
10868 5' -60.8 NC_002794.1 + 19444 0.67 0.703835
Target:  5'- aGGCcccGAGCGggcacGAGCGGCgGCGGcgGCGg -3'
miRNA:   3'- -CCGca-CUUGCa----CUCGCCGgCGCC--CGU- -5'
10868 5' -60.8 NC_002794.1 + 21919 0.68 0.646088
Target:  5'- cGGCGgaGACGacGGCGGCgGCGcGGCGc -3'
miRNA:   3'- -CCGCacUUGCacUCGCCGgCGC-CCGU- -5'
10868 5' -60.8 NC_002794.1 + 23920 0.75 0.316952
Target:  5'- aGCGUGGGCGagcGAGCgauccgagcccGGCCGCGGcGCAc -3'
miRNA:   3'- cCGCACUUGCa--CUCG-----------CCGGCGCC-CGU- -5'
10868 5' -60.8 NC_002794.1 + 30041 0.68 0.65578
Target:  5'- cGCGUGAACGaccGAGacccgGGcCCGCGGGg- -3'
miRNA:   3'- cCGCACUUGCa--CUCg----CC-GGCGCCCgu -5'
10868 5' -60.8 NC_002794.1 + 30207 0.67 0.72273
Target:  5'- gGGCGUGAuguACGUGuuccguucguacGGCaGCCGCaucGGGUu -3'
miRNA:   3'- -CCGCACU---UGCAC------------UCGcCGGCG---CCCGu -5'
10868 5' -60.8 NC_002794.1 + 33105 1.1 0.001244
Target:  5'- cGGCGUGAACGUGAGCGGCCGCGGGCAg -3'
miRNA:   3'- -CCGCACUUGCACUCGCCGGCGCCCGU- -5'
10868 5' -60.8 NC_002794.1 + 34719 0.67 0.741345
Target:  5'- cGGCGccacGAgGCGcGGGCGGCCGCaGaGCGc -3'
miRNA:   3'- -CCGCa---CU-UGCaCUCGCCGGCGcC-CGU- -5'
10868 5' -60.8 NC_002794.1 + 34838 0.79 0.178906
Target:  5'- cGGCGccgGAGCGggcgucgGAGCGggcGCCGCGGGCGc -3'
miRNA:   3'- -CCGCa--CUUGCa------CUCGC---CGGCGCCCGU- -5'
10868 5' -60.8 NC_002794.1 + 37762 0.67 0.732076
Target:  5'- cGGCGccGGCGgGAGCGGCCGuCGucgucGGCc -3'
miRNA:   3'- -CCGCacUUGCaCUCGCCGGC-GC-----CCGu -5'
10868 5' -60.8 NC_002794.1 + 37874 0.71 0.475894
Target:  5'- cGGCGUcucGGGCGgcggGGGCGGUgGCGgcGGCAg -3'
miRNA:   3'- -CCGCA---CUUGCa---CUCGCCGgCGC--CCGU- -5'
10868 5' -60.8 NC_002794.1 + 38104 0.66 0.750527
Target:  5'- cGGCGUGAagacGCGgGAGa-GCCGCgccagcugGGGCGu -3'
miRNA:   3'- -CCGCACU----UGCaCUCgcCGGCG--------CCCGU- -5'
10868 5' -60.8 NC_002794.1 + 38439 0.7 0.540257
Target:  5'- cGGCGggccGGAC-UGAggagccggcGCGGCCGCGGcGCGc -3'
miRNA:   3'- -CCGCa---CUUGcACU---------CGCCGGCGCC-CGU- -5'
10868 5' -60.8 NC_002794.1 + 42575 0.66 0.749613
Target:  5'- cGGCGgacccgcGGACGgagGAgggcgcgGCGGCCgggaGCGGGCu -3'
miRNA:   3'- -CCGCa------CUUGCa--CU-------CGCCGG----CGCCCGu -5'
10868 5' -60.8 NC_002794.1 + 44353 0.67 0.741345
Target:  5'- cGGCGaGAcCGaGAGC-GCgGCGGGCGc -3'
miRNA:   3'- -CCGCaCUuGCaCUCGcCGgCGCCCGU- -5'
10868 5' -60.8 NC_002794.1 + 48611 0.72 0.415576
Target:  5'- cGGCGUcGGccucagacGCG-GAGCGGCCGUcgGGGCc -3'
miRNA:   3'- -CCGCA-CU--------UGCaCUCGCCGGCG--CCCGu -5'
10868 5' -60.8 NC_002794.1 + 50579 0.7 0.559211
Target:  5'- cGGCGUGcGCGgcggcUGGGUGGCCGgcgcCGGGgGg -3'
miRNA:   3'- -CCGCACuUGC-----ACUCGCCGGC----GCCCgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.