Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1087 | 3' | -60.1 | NC_000929.1 | + | 22070 | 1.11 | 0.000131 |
Target: 5'- gUGCAACGGGAGCGGCGCUGGCUGACCu -3' miRNA: 3'- -ACGUUGCCCUCGCCGCGACCGACUGG- -5' |
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1087 | 3' | -60.1 | NC_000929.1 | + | 17467 | 0.67 | 0.308488 |
Target: 5'- aGUGAUGGcuGCGGCGCU-GCUGucauCCa -3' miRNA: 3'- aCGUUGCCcuCGCCGCGAcCGACu---GG- -5' |
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1087 | 3' | -60.1 | NC_000929.1 | + | 25065 | 0.67 | 0.279056 |
Target: 5'- gGC-GCaGGAauuaUGGCGCUGGCUGAaaCCg -3' miRNA: 3'- aCGuUGcCCUc---GCCGCGACCGACU--GG- -5' |
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1087 | 3' | -60.1 | NC_000929.1 | + | 12128 | 0.68 | 0.272056 |
Target: 5'- cGCGAUGuGGuucGCGGCcagauugaCUGGCUGGCa -3' miRNA: 3'- aCGUUGC-CCu--CGCCGc-------GACCGACUGg -5' |
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1087 | 3' | -60.1 | NC_000929.1 | + | 31170 | 0.69 | 0.226962 |
Target: 5'- gGCAAUcuGAGuCGGCGCuuuuaugaaUGGCUGGCUg -3' miRNA: 3'- aCGUUGccCUC-GCCGCG---------ACCGACUGG- -5' |
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1087 | 3' | -60.1 | NC_000929.1 | + | 19021 | 0.69 | 0.209656 |
Target: 5'- -aCGGCGGuGGCGGUGCUGucuGCUGAUg -3' miRNA: 3'- acGUUGCCcUCGCCGCGAC---CGACUGg -5' |
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1087 | 3' | -60.1 | NC_000929.1 | + | 25622 | 0.7 | 0.187854 |
Target: 5'- gGCAacugguuACGGGAaCGGUcggaaaGCUGGCUGAUg -3' miRNA: 3'- aCGU-------UGCCCUcGCCG------CGACCGACUGg -5' |
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1087 | 3' | -60.1 | NC_000929.1 | + | 20475 | 0.73 | 0.108268 |
Target: 5'- cGCAAaucaaAGCGGCGCUGGCUGAg- -3' miRNA: 3'- aCGUUgccc-UCGCCGCGACCGACUgg -5' |
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1087 | 3' | -60.1 | NC_000929.1 | + | 27370 | 0.76 | 0.068475 |
Target: 5'- cUGCcauGCuGGGGGCGGCGCUGGauagcgucauuCUGACg -3' miRNA: 3'- -ACGu--UG-CCCUCGCCGCGACC-----------GACUGg -5' |
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1087 | 3' | -60.1 | NC_000929.1 | + | 10327 | 0.67 | 0.286198 |
Target: 5'- cUGCGGCuGGGAcagGCGGUaCUGGC-GACg -3' miRNA: 3'- -ACGUUG-CCCU---CGCCGcGACCGaCUGg -5' |
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1087 | 3' | -60.1 | NC_000929.1 | + | 32781 | 0.67 | 0.313876 |
Target: 5'- cGUAGCGGGAGUcaaaGUUGGCguaauuucccggaaUGACCu -3' miRNA: 3'- aCGUUGCCCUCGccg-CGACCG--------------ACUGG- -5' |
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1087 | 3' | -60.1 | NC_000929.1 | + | 27285 | 0.66 | 0.324071 |
Target: 5'- gUGUGACGGuAGCagaugugcugcuGGCcccGCUGGCUGugCc -3' miRNA: 3'- -ACGUUGCCcUCG------------CCG---CGACCGACugG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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