miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1087 5' -47 NC_000929.1 + 22499 0.66 0.968727
Target:  5'- aCGg--CAAAGccaUCAGCCUGAUUgACCg -3'
miRNA:   3'- -GCuuaGUUUCc--GGUCGGACUAAaUGG- -5'
1087 5' -47 NC_000929.1 + 292 0.67 0.956753
Target:  5'- aUGAGUCAuuuGGUgaCAGCUUGGUugUUAUCg -3'
miRNA:   3'- -GCUUAGUuu-CCG--GUCGGACUA--AAUGG- -5'
1087 5' -47 NC_000929.1 + 34949 0.67 0.947226
Target:  5'- ----gUAAuGcGCCagaAGCCUGAUUUACCg -3'
miRNA:   3'- gcuuaGUUuC-CGG---UCGGACUAAAUGG- -5'
1087 5' -47 NC_000929.1 + 27660 0.67 0.936408
Target:  5'- aCGggUUgcuGAuaccguuccugcGGGCCAGCCg---UUGCCa -3'
miRNA:   3'- -GCuuAG---UU------------UCCGGUCGGacuaAAUGG- -5'
1087 5' -47 NC_000929.1 + 36206 0.68 0.924272
Target:  5'- uGAAUCAcGGGCCAucagcuacGCgCUGAaagUUAUCa -3'
miRNA:   3'- gCUUAGUuUCCGGU--------CG-GACUa--AAUGG- -5'
1087 5' -47 NC_000929.1 + 14773 0.68 0.910814
Target:  5'- --uAUCAAAGGCCagucAGCCUG---UGCUg -3'
miRNA:   3'- gcuUAGUUUCCGG----UCGGACuaaAUGG- -5'
1087 5' -47 NC_000929.1 + 18817 0.68 0.910106
Target:  5'- ----aCAAAGcgccacaGCCAGCCUGAgc-GCCg -3'
miRNA:   3'- gcuuaGUUUC-------CGGUCGGACUaaaUGG- -5'
1087 5' -47 NC_000929.1 + 10101 0.69 0.880006
Target:  5'- -aGAUCAAccaccgaacgGGGCCAGCgUGAUU--CCa -3'
miRNA:   3'- gcUUAGUU----------UCCGGUCGgACUAAauGG- -5'
1087 5' -47 NC_000929.1 + 14142 0.7 0.862745
Target:  5'- ----gCAGAGGCCGcccGUCUGAUUUAUg -3'
miRNA:   3'- gcuuaGUUUCCGGU---CGGACUAAAUGg -5'
1087 5' -47 NC_000929.1 + 26826 0.72 0.725616
Target:  5'- gGGAUCGcuuucugcgaugaAAGGCucugugacCAGCCUGAUUaACCa -3'
miRNA:   3'- gCUUAGU-------------UUCCG--------GUCGGACUAAaUGG- -5'
1087 5' -47 NC_000929.1 + 24576 0.73 0.679602
Target:  5'- aGGAUCAgGGGGCCaugcacGGCUggGAUUUACCc -3'
miRNA:   3'- gCUUAGU-UUCCGG------UCGGa-CUAAAUGG- -5'
1087 5' -47 NC_000929.1 + 22107 1.15 0.001739
Target:  5'- cCGAAUCAAAGGCCAGCCUGAUUUACCg -3'
miRNA:   3'- -GCUUAGUUUCCGGUCGGACUAAAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.