miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10872 3' -59.5 NC_002794.1 + 186957 0.66 0.85447
Target:  5'- ----gGGCCGCUggCCGCcgCCUCCAGc -3'
miRNA:   3'- gcuugUCGGCGAg-GGCGa-GGAGGUCc -5'
10872 3' -59.5 NC_002794.1 + 180621 0.66 0.85447
Target:  5'- aCGAcACGGCgGCccaCCCGCg-CUCCAGa -3'
miRNA:   3'- -GCU-UGUCGgCGa--GGGCGagGAGGUCc -5'
10872 3' -59.5 NC_002794.1 + 152510 0.66 0.85447
Target:  5'- gCGAACAGgUGCUCCagaUCCUCUAc- -3'
miRNA:   3'- -GCUUGUCgGCGAGGgcgAGGAGGUcc -5'
10872 3' -59.5 NC_002794.1 + 118487 0.66 0.85447
Target:  5'- aGAugAGCCGCaggugCUCGUgcgggCCgaCCAGGa -3'
miRNA:   3'- gCUugUCGGCGa----GGGCGa----GGa-GGUCC- -5'
10872 3' -59.5 NC_002794.1 + 134681 0.66 0.85447
Target:  5'- --cGCGGCCGCgcuuggCUCGaccgCCUCUGGGg -3'
miRNA:   3'- gcuUGUCGGCGa-----GGGCga--GGAGGUCC- -5'
10872 3' -59.5 NC_002794.1 + 150601 0.66 0.85447
Target:  5'- aGGACGGCCGggcgCCgGCUCUg-CGGGa -3'
miRNA:   3'- gCUUGUCGGCga--GGgCGAGGagGUCC- -5'
10872 3' -59.5 NC_002794.1 + 73078 0.66 0.846935
Target:  5'- aGGACGGgCGCa-CCGUcaagaUCUUCCAGGu -3'
miRNA:   3'- gCUUGUCgGCGagGGCG-----AGGAGGUCC- -5'
10872 3' -59.5 NC_002794.1 + 123573 0.66 0.846935
Target:  5'- uCGAgcgccACGGCCGCcgCCCGUgcagCgUCCcGGa -3'
miRNA:   3'- -GCU-----UGUCGGCGa-GGGCGa---GgAGGuCC- -5'
10872 3' -59.5 NC_002794.1 + 30094 0.66 0.846935
Target:  5'- gCGcGCGGCCGgUCCCGacccaCCgcCCGGGu -3'
miRNA:   3'- -GCuUGUCGGCgAGGGCga---GGa-GGUCC- -5'
10872 3' -59.5 NC_002794.1 + 38614 0.66 0.846935
Target:  5'- cCGGACGGgCGCgUCCCGaCUCg-CCGGu -3'
miRNA:   3'- -GCUUGUCgGCG-AGGGC-GAGgaGGUCc -5'
10872 3' -59.5 NC_002794.1 + 42281 0.66 0.846935
Target:  5'- --cGCcGCCGCUCCuCGUugaucUUCUUCAGGa -3'
miRNA:   3'- gcuUGuCGGCGAGG-GCG-----AGGAGGUCC- -5'
10872 3' -59.5 NC_002794.1 + 37542 0.66 0.840001
Target:  5'- gCGAACAGCCGCcggaggggccacgaCCGCgUCUCCGa- -3'
miRNA:   3'- -GCUUGUCGGCGag------------GGCGaGGAGGUcc -5'
10872 3' -59.5 NC_002794.1 + 186392 0.66 0.839222
Target:  5'- --cGCAGCCGCagCCGCggCCgcaCCAGu -3'
miRNA:   3'- gcuUGUCGGCGagGGCGa-GGa--GGUCc -5'
10872 3' -59.5 NC_002794.1 + 114586 0.66 0.839222
Target:  5'- aGggUgcucGUCGCUCUggacgaGCUCUUCCAGGu -3'
miRNA:   3'- gCuuGu---CGGCGAGGg-----CGAGGAGGUCC- -5'
10872 3' -59.5 NC_002794.1 + 40583 0.66 0.839222
Target:  5'- ----uGGCCGCgggCCCuCUCCUCCGa- -3'
miRNA:   3'- gcuugUCGGCGa--GGGcGAGGAGGUcc -5'
10872 3' -59.5 NC_002794.1 + 74098 0.66 0.839222
Target:  5'- gGGACAGCUGCggCUGCUcacCCUCgagCAGGc -3'
miRNA:   3'- gCUUGUCGGCGagGGCGA---GGAG---GUCC- -5'
10872 3' -59.5 NC_002794.1 + 81139 0.66 0.839222
Target:  5'- --cACGGCCGCUCCauccgGCUCC-CCu-- -3'
miRNA:   3'- gcuUGUCGGCGAGGg----CGAGGaGGucc -5'
10872 3' -59.5 NC_002794.1 + 112214 0.66 0.839222
Target:  5'- gGAgcACGGcCCGCUCCaGggCgUCCAGGg -3'
miRNA:   3'- gCU--UGUC-GGCGAGGgCgaGgAGGUCC- -5'
10872 3' -59.5 NC_002794.1 + 119146 0.66 0.839222
Target:  5'- uCGggUGGUCGCgcagcaggUCCGCgaaggCCUCgGGGa -3'
miRNA:   3'- -GCuuGUCGGCGa-------GGGCGa----GGAGgUCC- -5'
10872 3' -59.5 NC_002794.1 + 182764 0.66 0.839222
Target:  5'- gGuAGCAGCCGCacgCCCGgUCCaCCAc- -3'
miRNA:   3'- gC-UUGUCGGCGa--GGGCgAGGaGGUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.