miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10873 3' -52.4 NC_002794.1 + 175273 0.66 0.991762
Target:  5'- uGUCAggcaGUUGgagugUUCGGAACguGAcGCUCg -3'
miRNA:   3'- -CAGUg---CAACa----AGGCCUUGguCU-CGAG- -5'
10873 3' -52.4 NC_002794.1 + 147660 0.66 0.991762
Target:  5'- -gCGCGau-UUCCGGAGCCu--GCUCg -3'
miRNA:   3'- caGUGCaacAAGGCCUUGGucuCGAG- -5'
10873 3' -52.4 NC_002794.1 + 179898 0.66 0.989284
Target:  5'- -aCACGUc--UCCGGGAauCCGGAGCg- -3'
miRNA:   3'- caGUGCAacaAGGCCUU--GGUCUCGag -5'
10873 3' -52.4 NC_002794.1 + 119972 0.66 0.986261
Target:  5'- cUCugGUgGUUCgacgagCGGAGCCGcAGCUCu -3'
miRNA:   3'- cAGugCAaCAAG------GCCUUGGUcUCGAG- -5'
10873 3' -52.4 NC_002794.1 + 130051 0.66 0.986261
Target:  5'- cGUCGcCGUca--CCGGAGCCGGAGgaCu -3'
miRNA:   3'- -CAGU-GCAacaaGGCCUUGGUCUCgaG- -5'
10873 3' -52.4 NC_002794.1 + 182926 0.66 0.986261
Target:  5'- cGUCGCucUGgaaguagUCCGGcGCCGG-GCUCg -3'
miRNA:   3'- -CAGUGcaACa------AGGCCuUGGUCuCGAG- -5'
10873 3' -52.4 NC_002794.1 + 147204 0.67 0.980553
Target:  5'- cUCuugcCGUcGggCCGGGGCCGGGGCg- -3'
miRNA:   3'- cAGu---GCAaCaaGGCCUUGGUCUCGag -5'
10873 3' -52.4 NC_002794.1 + 52635 0.67 0.978304
Target:  5'- -cCGCGUcGaaCgGGAGCCGGAGCg- -3'
miRNA:   3'- caGUGCAaCaaGgCCUUGGUCUCGag -5'
10873 3' -52.4 NC_002794.1 + 63011 0.67 0.973238
Target:  5'- -gCACGUgg--CUGGAGCUGGuGCUCg -3'
miRNA:   3'- caGUGCAacaaGGCCUUGGUCuCGAG- -5'
10873 3' -52.4 NC_002794.1 + 87370 0.68 0.970112
Target:  5'- --aGCGgcGUUCUGGGcggcgcgGCCAGAGCg- -3'
miRNA:   3'- cagUGCaaCAAGGCCU-------UGGUCUCGag -5'
10873 3' -52.4 NC_002794.1 + 137563 0.68 0.967367
Target:  5'- cGUCGCGccgccGUcgccgCCGGGGCCGGAGUg- -3'
miRNA:   3'- -CAGUGCaa---CAa----GGCCUUGGUCUCGag -5'
10873 3' -52.4 NC_002794.1 + 62258 0.7 0.906794
Target:  5'- uUCGCGcUGcgCCuGGucaAGCCGGAGCUCg -3'
miRNA:   3'- cAGUGCaACaaGG-CC---UUGGUCUCGAG- -5'
10873 3' -52.4 NC_002794.1 + 71979 0.71 0.879976
Target:  5'- gGUCcCGgcGgagCCGGAgccgauaccGCCGGAGCUCg -3'
miRNA:   3'- -CAGuGCaaCaa-GGCCU---------UGGUCUCGAG- -5'
10873 3' -52.4 NC_002794.1 + 32574 0.72 0.849552
Target:  5'- aGUCGCGcgcggcgGUgCCGGGGCCGGGGC-Cg -3'
miRNA:   3'- -CAGUGCaa-----CAaGGCCUUGGUCUCGaG- -5'
10873 3' -52.4 NC_002794.1 + 154400 0.72 0.841424
Target:  5'- uUCGCGUgGUgCCGGuGGCCAGcGCUCg -3'
miRNA:   3'- cAGUGCAaCAaGGCC-UUGGUCuCGAG- -5'
10873 3' -52.4 NC_002794.1 + 187319 0.81 0.370682
Target:  5'- cGUCGCGggGUUCCGcAGCCGGAGCa- -3'
miRNA:   3'- -CAGUGCaaCAAGGCcUUGGUCUCGag -5'
10873 3' -52.4 NC_002794.1 + 31502 1.09 0.007548
Target:  5'- cGUCACGUUGUUCCGGAACCAGAGCUCc -3'
miRNA:   3'- -CAGUGCAACAAGGCCUUGGUCUCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.