Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10873 | 3' | -52.4 | NC_002794.1 | + | 31502 | 1.09 | 0.007548 |
Target: 5'- cGUCACGUUGUUCCGGAACCAGAGCUCc -3' miRNA: 3'- -CAGUGCAACAAGGCCUUGGUCUCGAG- -5' |
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10873 | 3' | -52.4 | NC_002794.1 | + | 32574 | 0.72 | 0.849552 |
Target: 5'- aGUCGCGcgcggcgGUgCCGGGGCCGGGGC-Cg -3' miRNA: 3'- -CAGUGCaa-----CAaGGCCUUGGUCUCGaG- -5' |
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10873 | 3' | -52.4 | NC_002794.1 | + | 52635 | 0.67 | 0.978304 |
Target: 5'- -cCGCGUcGaaCgGGAGCCGGAGCg- -3' miRNA: 3'- caGUGCAaCaaGgCCUUGGUCUCGag -5' |
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10873 | 3' | -52.4 | NC_002794.1 | + | 62258 | 0.7 | 0.906794 |
Target: 5'- uUCGCGcUGcgCCuGGucaAGCCGGAGCUCg -3' miRNA: 3'- cAGUGCaACaaGG-CC---UUGGUCUCGAG- -5' |
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10873 | 3' | -52.4 | NC_002794.1 | + | 63011 | 0.67 | 0.973238 |
Target: 5'- -gCACGUgg--CUGGAGCUGGuGCUCg -3' miRNA: 3'- caGUGCAacaaGGCCUUGGUCuCGAG- -5' |
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10873 | 3' | -52.4 | NC_002794.1 | + | 71979 | 0.71 | 0.879976 |
Target: 5'- gGUCcCGgcGgagCCGGAgccgauaccGCCGGAGCUCg -3' miRNA: 3'- -CAGuGCaaCaa-GGCCU---------UGGUCUCGAG- -5' |
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10873 | 3' | -52.4 | NC_002794.1 | + | 87370 | 0.68 | 0.970112 |
Target: 5'- --aGCGgcGUUCUGGGcggcgcgGCCAGAGCg- -3' miRNA: 3'- cagUGCaaCAAGGCCU-------UGGUCUCGag -5' |
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10873 | 3' | -52.4 | NC_002794.1 | + | 119972 | 0.66 | 0.986261 |
Target: 5'- cUCugGUgGUUCgacgagCGGAGCCGcAGCUCu -3' miRNA: 3'- cAGugCAaCAAG------GCCUUGGUcUCGAG- -5' |
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10873 | 3' | -52.4 | NC_002794.1 | + | 130051 | 0.66 | 0.986261 |
Target: 5'- cGUCGcCGUca--CCGGAGCCGGAGgaCu -3' miRNA: 3'- -CAGU-GCAacaaGGCCUUGGUCUCgaG- -5' |
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10873 | 3' | -52.4 | NC_002794.1 | + | 137563 | 0.68 | 0.967367 |
Target: 5'- cGUCGCGccgccGUcgccgCCGGGGCCGGAGUg- -3' miRNA: 3'- -CAGUGCaa---CAa----GGCCUUGGUCUCGag -5' |
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10873 | 3' | -52.4 | NC_002794.1 | + | 147204 | 0.67 | 0.980553 |
Target: 5'- cUCuugcCGUcGggCCGGGGCCGGGGCg- -3' miRNA: 3'- cAGu---GCAaCaaGGCCUUGGUCUCGag -5' |
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10873 | 3' | -52.4 | NC_002794.1 | + | 147660 | 0.66 | 0.991762 |
Target: 5'- -gCGCGau-UUCCGGAGCCu--GCUCg -3' miRNA: 3'- caGUGCaacAAGGCCUUGGucuCGAG- -5' |
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10873 | 3' | -52.4 | NC_002794.1 | + | 154400 | 0.72 | 0.841424 |
Target: 5'- uUCGCGUgGUgCCGGuGGCCAGcGCUCg -3' miRNA: 3'- cAGUGCAaCAaGGCC-UUGGUCuCGAG- -5' |
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10873 | 3' | -52.4 | NC_002794.1 | + | 175273 | 0.66 | 0.991762 |
Target: 5'- uGUCAggcaGUUGgagugUUCGGAACguGAcGCUCg -3' miRNA: 3'- -CAGUg---CAACa----AGGCCUUGguCU-CGAG- -5' |
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10873 | 3' | -52.4 | NC_002794.1 | + | 179898 | 0.66 | 0.989284 |
Target: 5'- -aCACGUc--UCCGGGAauCCGGAGCg- -3' miRNA: 3'- caGUGCAacaAGGCCUU--GGUCUCGag -5' |
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10873 | 3' | -52.4 | NC_002794.1 | + | 182926 | 0.66 | 0.986261 |
Target: 5'- cGUCGCucUGgaaguagUCCGGcGCCGG-GCUCg -3' miRNA: 3'- -CAGUGcaACa------AGGCCuUGGUCuCGAG- -5' |
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10873 | 3' | -52.4 | NC_002794.1 | + | 187319 | 0.81 | 0.370682 |
Target: 5'- cGUCGCGggGUUCCGcAGCCGGAGCa- -3' miRNA: 3'- -CAGUGCaaCAAGGCcUUGGUCUCGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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